#!/usr/bin/env python # Copyright 2011-2013 Kwant authors. # # This file is part of Kwant. It is subject to the license terms in the # LICENSE file found in the top-level directory of this distribution and at # http://kwant-project.org/license. A list of Kwant authors can be found in # the AUTHORS file at the top-level directory of this distribution and at # http://kwant-project.org/authors. from __future__ import print_function import sys import re import os import glob import subprocess import ConfigParser from distutils.core import setup, Extension, Command from distutils.util import get_platform from distutils.errors import DistutilsError, DistutilsModuleError, \ CCompilerError from distutils.command.build import build as distutils_build from distutils.command.sdist import sdist as distutils_sdist import numpy CONFIG_FILE = 'build.conf' README_FILE = 'README.rst' README_END_BEFORE = 'See also in this directory:' STATIC_VERSION_FILE = 'kwant/_static_version.py' REQUIRED_CYTHON_VERSION = (0, 22) NO_CYTHON_OPTION = '--no-cython' TUT_DIR = 'tutorial' TUT_GLOB = 'doc/source/tutorial/*.py' TUT_HIDDEN_PREFIX = '#HIDDEN' try: import Cython except: cython_version = () else: match = re.match('([0-9.]*)(.*)', Cython.__version__) cython_version = [int(n) for n in match.group(1).split('.')] # Decrease version if the version string contains a suffix. if match.group(2): while cython_version[-1] == 0: cython_version.pop() cython_version[-1] -= 1 cython_version = tuple(cython_version) try: sys.argv.remove(NO_CYTHON_OPTION) cythonize = False except ValueError: cythonize = True if cythonize and cython_version: from Cython.Distutils import build_ext else: from distutils.command.build_ext import build_ext distr_root = os.path.dirname(os.path.abspath(__file__)) def header(title=''): return title.center(79, '*') error_msg = """{sep} The compilation of Kwant has failed. Please examine the error message above and consult the installation instructions in README.rst. You might have to customize {{file}}. {sep} Build configuration was: {{summary}} {sep}""" error_msg = error_msg.format(sep=header()) class kwant_build_ext(build_ext): def run(self): if not config_file_present: # Create an empty config file if none is present so that the # extensions will not be rebuilt each time. Only depending on the # config file if it is present would make it impossible to detect a # necessary rebuild due to a deleted config file. with open(CONFIG_FILE, 'w') as f: f.write('# Created by setup.py - feel free to modify.\n') try: build_ext.run(self) except (DistutilsError, CCompilerError): print(error_msg.format(file=CONFIG_FILE, summary=build_summary), file=sys.stderr) raise print(header(' Build summary ')) print(build_summary) class build_tut(Command): description = "build the tutorial scripts" user_options = [] def initialize_options(self): pass def finalize_options(self): pass def run(self): if not os.path.exists(TUT_DIR): os.mkdir(TUT_DIR) for in_fname in glob.glob(TUT_GLOB): out_fname = os.path.join(TUT_DIR, os.path.basename(in_fname)) with open(in_fname) as in_file: with open(out_fname, 'w') as out_file: for line in in_file: if not line.startswith(TUT_HIDDEN_PREFIX): out_file.write(line) # Our version of the "build" command also makes sure the tutorial is made. # Even though the tutorial is not necessary for installation, and "build" is # supposed to make everything needed to install, this is a robust way to ensure # that the tutorial is present. class kwant_build(distutils_build): sub_commands = [('build_tut', None)] + distutils_build.sub_commands class test(Command): description = "build, then run the unit tests" user_options = [] def initialize_options(self): pass def finalize_options(self): pass def run(self): try: from nose.core import run except ImportError: raise DistutilsModuleError('nose <http://nose.readthedocs.org/> ' 'is needed to run the tests') self.run_command('build') major, minor = sys.version_info[:2] lib_dir = "build/lib.{0}-{1}.{2}".format(get_platform(), major, minor) print(header(' Tests ')) if not run(argv=[__file__, '-v', lib_dir]): raise DistutilsError('at least one of the tests failed') def git_lsfiles(): try: p = subprocess.Popen(['git', 'ls-files'], cwd=distr_root, stdout=subprocess.PIPE, stderr=subprocess.PIPE) except OSError: return if p.wait() != 0: return return p.communicate()[0].split('\n')[:-1] # Make the command "sdist" depend on "build". This verifies that the # distribution in the current state actually builds. It also makes sure that # the Cython-made C files and the tutorial will be included in the source # distribution and that they will be up-to-date. class kwant_sdist(distutils_sdist): sub_commands = [('build', None)] + distutils_sdist.sub_commands def run(self): names = git_lsfiles() trustworthy = True if names is None: # Check that MANIFEST exists and has not been generated by # distutils. try: with open(distr_root + '/MANIFEST', 'r') as f: line = f.read() except IOError: print("error: MANIFEST file is missing and Git is not" " available to regenerate it.", file=sys.stderr) exit(1) trustworthy = not line.strip().startswith('#') else: # Generate MANIFEST file. with open(distr_root + '/MANIFEST', 'w') as f: for name in names: a, sep, b = name.rpartition('/') if b == '.gitignore': continue stem, dot, extension = b.rpartition('.') if extension == 'pyx': f.write(''.join([a, sep, stem, dot, 'c', '\n'])) f.write(name + '\n') f.write(STATIC_VERSION_FILE + '\n') f.write('MANIFEST\n') distutils_sdist.run(self) msg = None if names is None: msg = ['Git was not available for re-generating ' 'the MANIFEST file (the list of file', 'names to be included in the source' ' distribution). The old MANIFEST was used.'] if not trustworthy: msg = ['-The existing MANIFEST file seems to' ' have been generated by distutils (it begins', '-with a comment). It may well be incomplete.'] if msg is not None: msg.insert(0, header(' Warning ')) print(msg, sep='\n', file=sys.stderr) # This is an exact copy of the function from kwant/_common.py. We can't import # it here (because Kwant is not yet built when this scipt is run), so we just # include a copy. def get_version_from_git(): try: p = subprocess.Popen(['git', 'rev-parse', '--show-toplevel'], cwd=distr_root, stdout=subprocess.PIPE, stderr=subprocess.PIPE) except OSError: return if p.wait() != 0: return # TODO: use os.path.samefile once we depend on Python >= 3.3. if os.path.normpath(p.communicate()[0].rstrip('\n')) != distr_root: # The top-level directory of the current Git repository is not the same # as the root directory of the Kwant distribution: do not extract the # version from Git. return # git describe --first-parent does not take into account tags from branches # that were merged-in. for opts in [['--first-parent'], []]: try: p = subprocess.Popen(['git', 'describe'] + opts, cwd=distr_root, stdout=subprocess.PIPE, stderr=subprocess.PIPE) except OSError: return if p.wait() == 0: break else: return version = p.communicate()[0].rstrip('\n') if version[0] == 'v': version = version[1:] try: p = subprocess.Popen(['git', 'diff', '--quiet'], cwd=distr_root) except OSError: version += '-confused' # This should never happen. else: if p.wait() == 1: version += '-dirty' return version def get_static_version(): """Return the version as recorded inside the source code.""" try: with open(STATIC_VERSION_FILE) as f: contents = f.read() assert contents[:11] == "version = '" assert contents[-2:] == "'\n" return contents[11:-2] except: return None def version(): """Determine the version of Kwant. Return it and save it in a file.""" git_version = get_version_from_git() static_version = get_static_version() if git_version is not None: version = git_version if static_version != git_version: with open(STATIC_VERSION_FILE, 'w') as f: f.write("version = '%s'\n" % version) elif static_version is not None: version = static_version else: version = 'unknown' return version def long_description(): text = [] try: with open(README_FILE) as f: for line in f: if line.startswith(README_END_BEFORE): break text.append(line.rstrip()) while text[-1] == "": text.pop() except: return '' return '\n'.join(text) def packages(): return [root.replace('/', '.') for root, dnames, fnames in os.walk('kwant') if '__init__.py' in fnames or root.endswith('/tests')] def search_mumps(): """Return the configuration for MUMPS if it is available in a known way. This is known to work with the MUMPS provided by the Debian package libmumps-scotch-dev.""" libs = ['zmumps_scotch', 'mumps_common_scotch', 'pord', 'mpiseq_scotch', 'gfortran'] cmd = ['gcc'] cmd.extend(['-l' + lib for lib in libs]) cmd.extend(['-o/dev/null', '-xc', '-']) try: p = subprocess.Popen(cmd, stdin=subprocess.PIPE, stderr=subprocess.PIPE) except OSError: pass else: p.communicate(input='int main() {}\n') if p.wait() == 0: return {'libraries': libs} return {} def extensions(): """Return a list of tuples (args, kwrds) to be passed to Extension. possibly after replacing ".pyx" with ".c" if Cython is not to be used.""" global build_summary, config_file_present build_summary = [] #### Add components of Kwant without external compile-time dependencies. result = [ (['kwant._system', ['kwant/_system.pyx']], {'include_dirs': ['kwant/graph']}), (['kwant.graph.core', ['kwant/graph/core.pyx']], {'depends': ['kwant/graph/core.pxd', 'kwant/graph/defs.h', 'kwant/graph/defs.pxd']}), (['kwant.graph.utils', ['kwant/graph/utils.pyx']], {'depends': ['kwant/graph/defs.h', 'kwant/graph/defs.pxd', 'kwant/graph/core.pxd']}), (['kwant.graph.slicer', ['kwant/graph/slicer.pyx', 'kwant/graph/c_slicer/partitioner.cc', 'kwant/graph/c_slicer/slicer.cc']], {'depends': ['kwant/graph/defs.h', 'kwant/graph/defs.pxd', 'kwant/graph/core.pxd', 'kwant/graph/c_slicer.pxd', 'kwant/graph/c_slicer/bucket_list.h', 'kwant/graph/c_slicer/graphwrap.h', 'kwant/graph/c_slicer/partitioner.h', 'kwant/graph/c_slicer/slicer.h']})] #### Add components of Kwant with external compile-time dependencies. config = ConfigParser.ConfigParser() try: with open(CONFIG_FILE) as f: config.readfp(f) except IOError: config_file_present = False else: config_file_present = True kwrds_by_section = {} for section in config.sections(): kwrds_by_section[section] = kwrds = {} for name, value in config.items(section): kwrds[name] = value.split() # Setup LAPACK. lapack = kwrds_by_section.get('lapack') if lapack: build_summary.append('User-configured LAPACK and BLAS') else: lapack = {'libraries': ['lapack', 'blas']} build_summary.append('Default LAPACK and BLAS') kwrds = lapack.copy() kwrds.setdefault('depends', []).extend( [CONFIG_FILE, 'kwant/linalg/f_lapack.pxd']) result.append((['kwant.linalg.lapack', ['kwant/linalg/lapack.pyx']], kwrds)) # Setup MUMPS. kwrds = kwrds_by_section.get('mumps') if kwrds: build_summary.append('User-configured MUMPS') else: kwrds = search_mumps() if kwrds: build_summary.append('Auto-configured MUMPS') if kwrds: for name, value in lapack.iteritems(): kwrds.setdefault(name, []).extend(value) kwrds.setdefault('depends', []).extend( [CONFIG_FILE, 'kwant/linalg/cmumps.pxd']) result.append((['kwant.linalg._mumps', ['kwant/linalg/_mumps.pyx']], kwrds)) else: build_summary.append('No MUMPS support') build_summary = '\n'.join(build_summary) return result def complain_cython_unavailable(): assert not cythonize or cython_version < REQUIRED_CYTHON_VERSION if cythonize: msg = "Install Cython {0} or newer so it can be made or use a source " \ "distribution of Kwant." ver = '.'.join(str(e) for e in REQUIRED_CYTHON_VERSION) print(msg.format(ver), file=sys.stderr) else: print("Run setup.py without", NO_CYTHON_OPTION, file=sys.stderr) def ext_modules(extensions): """Prepare the ext_modules argument for distutils' setup.""" result = [] for args, kwrds in extensions: if not cythonize or cython_version < REQUIRED_CYTHON_VERSION: if 'language' in kwrds: if kwrds['language'] == 'c': ext = '.c' elif kwrds['language'] == 'c++': ext = '.cpp' else: print('Unknown language', file=sys.stderr) exit(1) else: ext = '.c' pyx_files = [] cythonized_files = [] sources = [] for f in args[1]: if f[-4:] == '.pyx': pyx_files.append(f) f = f[:-4] + ext cythonized_files.append(f) sources.append(f) args[1] = sources try: cythonized_oldest = min(os.stat(f).st_mtime for f in cythonized_files) except OSError: print("error: Cython-generated file {} is missing.".format(f), file=sys.stderr) complain_cython_unavailable() exit(1) for f in pyx_files + kwrds.get('depends', []): if f == CONFIG_FILE: # The config file is only a dependency for the compilation # of the cythonized file, not for the cythonization. continue if os.stat(f).st_mtime > cythonized_oldest: msg = "error: {} is newer than its source file, but " if cythonize and not cython_version: msg += "Cython is not installed." elif cythonize: msg += "the installed Cython is too old." else: msg += "Cython is not to be run." print(msg.format(f), file=sys.stderr) complain_cython_unavailable() exit(1) result.append(Extension(*args, **kwrds)) return result def main(): setup(name='kwant', version=version(), author='C. W. Groth (CEA), M. Wimmer, ' 'A. R. Akhmerov, X. Waintal (CEA), and others', author_email='authors@kwant-project.org', description="Package for numerical quantum transport calculations.", long_description=long_description(), platforms=["Unix", "Linux", "Mac OS-X", "Windows"], url="http://kwant-project.org/", license="BSD", packages=packages(), cmdclass={'build': kwant_build, 'sdist': kwant_sdist, 'build_ext': kwant_build_ext, 'build_tut': build_tut, 'test': test}, ext_modules=ext_modules(extensions()), include_dirs=[numpy.get_include()]) if __name__ == '__main__': main()