From 1b738285b029211f2535b1dbd973455f712219f6 Mon Sep 17 00:00:00 2001
From: Bas Nijholt <basnijholt@gmail.com>
Date: Wed, 2 Oct 2019 14:26:02 +0200
Subject: [PATCH] add bib related files

---
 create_bib_file.py  | 141 ++++++++++++++++++++
 not_on_crossref.bib |  85 ++++++++++++
 paper.bib           | 312 ++++++++++++++++++++++----------------------
 paper.yaml          |  16 +++
 4 files changed, 400 insertions(+), 154 deletions(-)
 create mode 100644 create_bib_file.py
 create mode 100644 not_on_crossref.bib
 create mode 100644 paper.yaml

diff --git a/create_bib_file.py b/create_bib_file.py
new file mode 100644
index 0000000..7010c20
--- /dev/null
+++ b/create_bib_file.py
@@ -0,0 +1,141 @@
+# Adapted from https://gitlab.kwant-project.org/qt/basnijholt/thesis-bas-nijholt/blob/master/create_bib_file.py
+
+import functools
+import glob
+import os
+from concurrent.futures import ThreadPoolExecutor
+
+import requests
+import yaml
+
+
+def replace_key(key, bib_entry):
+    bib_type, *_ = bib_entry.split("{")
+    _, *rest = bib_entry.split(",")
+    rest = ",".join(rest)
+    # Now only modify `rest` because we don't want to touch the key.
+
+    # XXX: I am not sure whether these substitutions are needed.
+    # the problem seemed to be the utf-8 `requests.get` encoding.
+    to_replace = [("ö", r"\"{o}"), ("ü", r"\"{u}"), ("ë", r"\"{e}"), ("ï", r"\"{i}")]
+
+    for old, new in to_replace:
+        rest = rest.replace(old.upper(), new.upper())
+        rest = rest.replace(old.lower(), new.lower())
+
+    to_replace = [
+        (r"a{\r}", r"\r{a}"),  # "Nyga{\r}rd" -> "Nyg\r{a}rd", bug in doi.org
+        ("Josephson", "{J}osephson"),
+        ("Majorana", "{M}ajorana"),
+        ("Andreev", "{A}ndreev"),
+        ("Kramers", "{K}ramers"),
+        ("Kitaev", "{K}itaev"),
+        (
+            r"metastable0and$\uppi$states",
+            r"metastable $0$ and $\pi$ states",
+        ),  # fix for 10.1103/physrevb.63.214512
+        (
+            r"Land{\'{e}}{gFactors}",
+            r"Land{\'{e}} {$g$} Factors",
+        ),  # fix for PhysRevLett.96.026804
+    ]
+
+    # I got these by using JabRef and converting to abbr journals
+    # and parsing the git diff.
+    journals = [
+        ("Advanced Materials", "Adv. Mater."),
+        ("Annals of Physics", "Ann. Phys."),
+        ("Applied Physics Letters", "Appl. Phys. Lett."),
+        ("JETP Lett", "JETP Lett."),
+        ("Journal de Physique", "J. Phys."),
+        ("Journal of Computational Physics", "J. Comput. Phys."),
+        ("Journal of Experimental and Theoretical Physics", "J. Exp. Theor. Phys."),
+        ("Journal of Low Temperature Physics", "J. Low Temp. Phys."),
+        (
+            "Journal of Physics A: Mathematical and Theoretical",
+            "J. Phys. A: Math. Theor.",
+        ),
+        ("Journal of Physics: Condensed Matter", "J. Phys.: Condens. Matter"),
+        ("Nano Letters", "Nano Lett."),
+        ("Nature Communications", "Nat. Commun."),
+        ("Nature Materials", "Nat. Mater."),
+        ("Nature Nanotechnology", "Nat. Nanotechnol."),
+        ("Nature Physics", "Nat. Phys."),
+        ("New Journal of Physics", "New J. Phys."),
+        ("Physical Review B", "Phys. Rev. B"),
+        ("Physical Review Letters", "Phys. Rev. Lett."),
+        ("Physical Review X", "Phys. Rev. X"),
+        ("Physical Review", "Phys. Rev."),  # should be before the above subs
+        ("Physics-Uspekhi", "Phys. Usp."),
+        ("Reports on Progress in Physics", "Rep. Prog. Phys."),
+        ("Review of Scientific Instruments", "Rev. Sci. Instrum."),
+        ("Reviews of Modern Physics", "Rev. Mod. Phys."),
+        ("Science Advances", "Sci. Adv."),
+        ("Scientific Reports", "Sci. Rep."),
+        ("Semiconductor Science and Technology", "Semicond. Sci. Technol."),
+    ]
+
+    # Manually added
+    journals += [
+        (
+            "Annual Review of Condensed Matter Physics",
+            "Annu. Rev. Condens. Matter Phys.",
+        ),
+        ("{EPL} (Europhysics Letters)", "{EPL}"),
+        ("Nature Reviews Materials", "Nat. Rev. Mater."),
+        ("Physics Letters", "Phys. Lett."),
+        ("The European Physical Journal B", "Eur. Phys. J. B"),
+        ("{SIAM} Journal on Numerical Analysis", "{SIAM} J. Numer. Anal."),
+        ("{AIP} Conference Proceedings", "{AIP} Conf. Proc."),
+    ]
+
+    for old, new in to_replace + journals:
+        rest = rest.replace(old, new)
+
+    result = bib_type + "{" + key + "," + rest
+
+    print(result, "\n")
+    return result
+
+
+@functools.lru_cache()
+def doi2bib(doi):
+    """Return a bibTeX string of metadata for a given DOI."""
+    url = "http://dx.doi.org/" + doi
+    headers = {"accept": "application/x-bibtex"}
+    r = requests.get(url, headers=headers)
+    r.encoding = "utf-8"
+    return r.text
+
+
+bibs = [f for f in glob.glob("*yaml") if "tmp.yaml" not in f]
+print("Reading: ", bibs)
+
+mapping = {}
+for fname in bibs:
+    with open(fname) as f:
+        mapping = {**mapping, **yaml.safe_load(f)}
+dois = dict(sorted(mapping.items()))
+
+
+with ThreadPoolExecutor() as ex:
+    futs = ex.map(doi2bib, list(dois.values()))
+    bibs = list(futs)
+
+
+entries = [replace_key(key, bib) for key, bib in zip(dois.keys(), bibs)]
+
+bib_files = glob.glob("not_on_crossref.bib")
+with open("paper.bib", "w") as outfile:
+    outfile.write("@preamble{ {\\providecommand{\\BIBYu}{Yu} } }\n\n")
+    for fname in bib_files:
+        outfile.write(f"\n% Below is from `{fname}`.\n\n")
+        with open(fname) as infile:
+            outfile.write(infile.read())
+    outfile.write("\n% Below is from all `yaml` files.\n\n")
+    for e in entries:
+        for line in e.split('\n'):
+            # Remove the url line
+            if "url = {" not in line:
+                outfile.write(f"{line}\n")
+        outfile.write('\n')
diff --git a/not_on_crossref.bib b/not_on_crossref.bib
new file mode 100644
index 0000000..4d6ca7f
--- /dev/null
+++ b/not_on_crossref.bib
@@ -0,0 +1,85 @@
+@PhdThesis{Castro2008,
+  author = {Castro, Rui M},
+  title  = {Active learning and adaptive sampling for non-parametric inference},
+  year   = {2008},
+  school = {Rice University},
+}
+
+@InCollection{Figueiredo1995,
+  author    = {de Figueiredo, Luiz Henrique},
+  title     = {Adaptive sampling of parametric curves},
+  booktitle = {Graphics Gems V},
+  year      = {1995},
+  publisher = {Elsevier},
+  pages     = {173--178},
+}
+
+@Article{Galassi1996,
+  author  = {Galassi, Mark and Davies, Jim and Theiler, James and Gough, Brian and Jungman, Gerard and Alken, Patrick and Booth, Michael and Rossi, Fabrice},
+  title   = {GNU scientific library},
+  journal = {No. Release},
+  year    = {1996},
+  volume  = {2},
+}
+
+@Article{Laeven2019,
+  author  = {Laeven, Tom and Nijholt, Bas and Wimmer, Michael and Akhmerov, Anton R},
+  title   = {Enhanced proximity effect in zigzag-shaped Majorana Josephson junctions},
+  journal = {arXiv preprint arXiv:1903.06168},
+  year    = {2019},
+}
+
+@Article{Melo2019,
+  author  = {Melo, André and Rubbert, Sebastian and Akhmerov, Anton R},
+  title   = {Supercurrent-induced Majorana bound states in a planar geometry},
+  journal = {arXiv preprint arXiv:1905.02725},
+  year    = {2019},
+}
+
+@Misc{Nijholt2018,
+  author = {Bas Nijholt and Joseph Weston and Anton Akhmerov},
+  title  = {Adaptive documentation},
+  note   = {https://adaptive.readthedocs.io},
+  year   = {2018},
+}
+
+@Article{Takhtaganov2018,
+  author  = {Takhtaganov, Timur and Müller, Juliane},
+  title   = {Adaptive Gaussian process surrogates for Bayesian inference},
+  journal = {arXiv preprint arXiv:1809.10784},
+  year    = {2018},
+}
+
+@Article{Vuik2018,
+  author  = {Vuik, Adriaan and Nijholt, Bas and Akhmerov, AR and Wimmer, Michael},
+  title   = {Reproducing topological properties with quasi-Majorana states},
+  journal = {arXiv preprint arXiv:1806.02801},
+  year    = {2018},
+}
+
+@Online{Wolfram2011,
+  author  = {Stephen Wolfram},
+  title   = {Mathematica: Adaptive Plotting},
+  year    = {2011},
+  url     = {http://demonstrations.wolfram.com/AdaptivePlotting/},
+  urldate = {2019-09-10},
+}
+
+@Misc{WolframResearch,
+  author = {Wolfram Research, Inc.},
+  title  = {Mathematica, Version 12.0},
+  note   = {Champaign, IL, 2019},
+}
+
+@Article{Dyn1990,
+  doi = {10.1093/imanum/10.1.137},
+  url = {https://doi.org/10.1093%2Fimanum%2F10.1.137},
+  year = 1990,
+  publisher = {Oxford University Press ({OUP})},
+  volume = {10},
+  number = {1},
+  pages = {137--154},
+  author = {Nira Dyn and David Levin and Samuel Rippa},
+  title = {Data Dependent Triangulations for Piecewise Linear Interpolation},
+  journal = {{IMA} Journal of Numerical Analysis}
+}
diff --git a/paper.bib b/paper.bib
index 2062978..fdd3a41 100755
--- a/paper.bib
+++ b/paper.bib
@@ -1,3 +1,8 @@
+@preamble{ {\providecommand{\BIBYu}{Yu} } }
+
+
+% Below is from `not_on_crossref.bib`.
+
 @PhdThesis{Castro2008,
   author = {Castro, Rui M},
   title  = {Active learning and adaptive sampling for non-parametric inference},
@@ -71,208 +76,207 @@
   note   = {Champaign, IL, 2019},
 }
 
-% Below has DOI and is taken from the doi.org API
+@Article{Dyn1990,
+  doi = {10.1093/imanum/10.1.137},
+  url = {https://doi.org/10.1093%2Fimanum%2F10.1.137},
+  year = 1990,
+  publisher = {Oxford University Press ({OUP})},
+  volume = {10},
+  number = {1},
+  pages = {137--154},
+  author = {Nira Dyn and David Levin and Samuel Rippa},
+  title = {Data Dependent Triangulations for Piecewise Linear Interpolation},
+  journal = {{IMA} Journal of Numerical Analysis}
+}
+
+% Below is from all `yaml` files.
 
 @article{Alliez2003,
-  doi = {10.1145/882262.882296},
-  url = {https://doi.org/10.1145%2F882262.882296},
-  year = 2003,
-  month = {jul},
-  publisher = {Association for Computing Machinery ({ACM})},
-  volume = {22},
-  number = {3},
-  pages = {485},
-  author = {Pierre Alliez and David Cohen-Steiner and Olivier Devillers and Bruno L{\'{e}}vy and Mathieu Desbrun},
-  title = {Anisotropic polygonal remeshing},
-  journal = {{ACM} Transactions on Graphics}
+	doi = {10.1145/882262.882296},
+	year = 2003,
+	month = {jul},
+	publisher = {Association for Computing Machinery ({ACM})},
+	volume = {22},
+	number = {3},
+	pages = {485},
+	author = {Pierre Alliez and David Cohen-Steiner and Olivier Devillers and Bruno L{\'{e}}vy and Mathieu Desbrun},
+	title = {Anisotropic polygonal remeshing},
+	journal = {{ACM} Transactions on Graphics}
 }
 
 @article{Berger1984,
-  doi = {10.1016/0021-9991(84)90073-1},
-  url = {https://doi.org/10.1016%2F0021-9991%2884%2990073-1},
-  year = 1984,
-  month = {mar},
-  publisher = {Elsevier {BV}},
-  volume = {53},
-  number = {3},
-  pages = {484--512},
-  author = {Marsha J Berger and Joseph Oliger},
-  title = {Adaptive mesh refinement for hyperbolic partial differential equations},
-  journal = {Journal of Computational Physics}
+	doi = {10.1016/0021-9991(84)90073-1},
+	year = 1984,
+	month = {mar},
+	publisher = {Elsevier {BV}},
+	volume = {53},
+	number = {3},
+	pages = {484--512},
+	author = {Marsha J Berger and Joseph Oliger},
+	title = {Adaptive mesh refinement for hyperbolic partial differential equations},
+	journal = {J. Comput. Phys.}
 }
 
 @article{Berger1989,
-  doi = {10.1016/0021-9991(89)90035-1},
-  url = {https://doi.org/10.1016%2F0021-9991%2889%2990035-1},
-  year = 1989,
-  month = {may},
-  publisher = {Elsevier {BV}},
-  volume = {82},
-  number = {1},
-  pages = {64--84},
-  author = {M.J. Berger and P. Colella},
-  title = {Local adaptive mesh refinement for shock hydrodynamics},
-  journal = {Journal of Computational Physics}
+	doi = {10.1016/0021-9991(89)90035-1},
+	year = 1989,
+	month = {may},
+	publisher = {Elsevier {BV}},
+	volume = {82},
+	number = {1},
+	pages = {64--84},
+	author = {M.J. Berger and P. Colella},
+	title = {Local adaptive mesh refinement for shock hydrodynamics},
+	journal = {J. Comput. Phys.}
 }
 
 @article{Bommer2019,
-  doi = {10.1103/physrevlett.122.187702},
-  url = {https://doi.org/10.1103%2Fphysrevlett.122.187702},
-  year = 2019,
-  month = {may},
-  publisher = {American Physical Society ({APS})},
-  volume = {122},
-  number = {18},
-  author = {Jouri D.{\hspace{0.167em}}S. Bommer and Hao Zhang and \"{O}nder G\"{u}l and Bas Nijholt and Michael Wimmer and Filipp N. Rybakov and Julien Garaud and Donjan Rodic and Egor Babaev and Matthias Troyer and Diana Car and S{\'{e}}bastien R. Plissard and Erik P.{\hspace{0.167em}}A.{\hspace{0.167em}}M. Bakkers and Kenji Watanabe and Takashi Taniguchi and Leo P. Kouwenhoven},
-  title = {Spin-Orbit Protection of Induced Superconductivity in Majorana Nanowires},
-  journal = {Physical Review Letters}
+	doi = {10.1103/physrevlett.122.187702},
+	year = 2019,
+	month = {may},
+	publisher = {American Physical Society ({APS})},
+	volume = {122},
+	number = {18},
+	author = {Jouri D.{\hspace{0.167em}}S. Bommer and Hao Zhang and \"{O}nder G\"{u}l and Bas Nijholt and Michael Wimmer and Filipp N. Rybakov and Julien Garaud and Donjan Rodic and Egor Babaev and Matthias Troyer and Diana Car and S{\'{e}}bastien R. Plissard and Erik P.{\hspace{0.167em}}A.{\hspace{0.167em}}M. Bakkers and Kenji Watanabe and Takashi Taniguchi and Leo P. Kouwenhoven},
+	title = {Spin-Orbit Protection of Induced Superconductivity in {M}ajorana Nanowires},
+	journal = {Phys. Rev. Lett.}
 }
 
 @article{Chen2017,
-  doi = {10.1088/1361-6501/aa7d31},
-  url = {https://doi.org/10.1088%2F1361-6501%2Faa7d31},
-  year = 2017,
-  month = {sep},
-  publisher = {{IOP} Publishing},
-  volume = {28},
-  number = {10},
-  pages = {105005},
-  author = {Yuhang Chen and Chaoyang Peng},
-  title = {Intelligent adaptive sampling guided by Gaussian process inference},
-  journal = {Measurement Science and Technology}
+	doi = {10.1088/1361-6501/aa7d31},
+	year = 2017,
+	month = {sep},
+	publisher = {{IOP} Publishing},
+	volume = {28},
+	number = {10},
+	pages = {105005},
+	author = {Yuhang Chen and Chaoyang Peng},
+	title = {Intelligent adaptive sampling guided by Gaussian process inference},
+	journal = {Measurement Science and Technology}
 }
 
 @article{Clenshaw1960,
-  doi = {10.1007/bf01386223},
-  url = {https://doi.org/10.1007%2Fbf01386223},
-  year = 1960,
-  month = {dec},
-  publisher = {Springer Science and Business Media {LLC}},
-  volume = {2},
-  number = {1},
-  pages = {197--205},
-  author = {C. W. Clenshaw and A. R. Curtis},
-  title = {A method for numerical integration on an automatic computer},
-  journal = {Numerische Mathematik}
+	doi = {10.1007/bf01386223},
+	year = 1960,
+	month = {dec},
+	publisher = {Springer Science and Business Media {LLC}},
+	volume = {2},
+	number = {1},
+	pages = {197--205},
+	author = {C. W. Clenshaw and A. R. Curtis},
+	title = {A method for numerical integration on an automatic computer},
+	journal = {Numerische Mathematik}
 }
 
 @inproceedings{DeRose1998,
-  doi = {10.1145/280814.280826},
-  url = {https://doi.org/10.1145%2F280814.280826},
-  year = 1998,
-  publisher = {{ACM} Press},
-  author = {Tony DeRose and Michael Kass and Tien Truong},
-  title = {Subdivision surfaces in character animation},
-  booktitle = {Proceedings of the 25th annual conference on Computer graphics and interactive techniques  - {SIGGRAPH} {\textquotesingle}98}
+	doi = {10.1145/280814.280826},
+	year = 1998,
+	publisher = {{ACM} Press},
+	author = {Tony DeRose and Michael Kass and Tien Truong},
+	title = {Subdivision surfaces in character animation},
+	booktitle = {Proceedings of the 25th annual conference on Computer graphics and interactive techniques  - {SIGGRAPH} {\textquotesingle}98}
 }
 
 @article{Dyn1990,
-  doi = {10.1093/imanum/10.1.137},
-  url = {https://doi.org/10.1093%2Fimanum%2F10.1.137},
-  year = 1990,
-  publisher = {Oxford University Press ({OUP})},
-  volume = {10},
-  number = {1},
-  pages = {137--154},
-  author = {NIRA DYN and DAVID LEVIN and SAMUEL RIPPA},
-  title = {Data Dependent Triangulations for Piecewise Linear Interpolation},
-  journal = {{IMA} Journal of Numerical Analysis}
+	doi = {10.1093/imanum/10.1.137},
+	year = 1990,
+	publisher = {Oxford University Press ({OUP})},
+	volume = {10},
+	number = {1},
+	pages = {137--154},
+	author = {NIRA DYN and DAVID LEVIN and SAMUEL RIPPA},
+	title = {Data Dependent Triangulations for Piecewise Linear Interpolation},
+	journal = {{IMA} Journal of Numerical Analysis}
 }
 
 @article{Emery1998,
-  doi = {10.1088/0957-0233/9/6/003},
-  url = {https://doi.org/10.1088%2F0957-0233%2F9%2F6%2F003},
-  year = 1998,
-  month = {jun},
-  publisher = {{IOP} Publishing},
-  volume = {9},
-  number = {6},
-  pages = {864--876},
-  author = {A F Emery and Aleksey V Nenarokomov},
-  title = {Optimal experiment design},
-  journal = {Measurement Science and Technology}
+	doi = {10.1088/0957-0233/9/6/003},
+	year = 1998,
+	month = {jun},
+	publisher = {{IOP} Publishing},
+	volume = {9},
+	number = {6},
+	pages = {864--876},
+	author = {A F Emery and Aleksey V Nenarokomov},
+	title = {Optimal experiment design},
+	journal = {Measurement Science and Technology}
 }
 
 @article{Gonnet2010,
-  doi = {10.1145/1824801.1824804},
-  url = {https://doi.org/10.1145%2F1824801.1824804},
-  year = 2010,
-  month = {sep},
-  publisher = {Association for Computing Machinery ({ACM})},
-  volume = {37},
-  number = {3},
-  pages = {1--32},
-  author = {Pedro Gonnet},
-  title = {Increasing the Reliability of Adaptive Quadrature Using Explicit Interpolants},
-  journal = {{ACM} Transactions on Mathematical Software}
+	doi = {10.1145/1824801.1824804},
+	year = 2010,
+	month = {sep},
+	publisher = {Association for Computing Machinery ({ACM})},
+	volume = {37},
+	number = {3},
+	pages = {1--32},
+	author = {Pedro Gonnet},
+	title = {Increasing the Reliability of Adaptive Quadrature Using Explicit Interpolants},
+	journal = {{ACM} Transactions on Mathematical Software}
 }
 
 @inproceedings{Gramacy2004,
-  doi = {10.1145/1015330.1015367},
-  url = {https://doi.org/10.1145%2F1015330.1015367},
-  year = 2004,
-  publisher = {{ACM} Press},
-  author = {Robert B. Gramacy and Herbert K. H. Lee and William G. Macready},
-  title = {Parameter space exploration with Gaussian process trees},
-  booktitle = {Twenty-first international conference on Machine learning  - {ICML} {\textquotesingle}04}
+	doi = {10.1145/1015330.1015367},
+	year = 2004,
+	publisher = {{ACM} Press},
+	author = {Robert B. Gramacy and Herbert K. H. Lee and William G. Macready},
+	title = {Parameter space exploration with Gaussian process trees},
+	booktitle = {Twenty-first international conference on Machine learning  - {ICML} {\textquotesingle}04}
 }
 
 @book{Hu2006,
-  doi = {10.1002/047005588x},
-  url = {https://doi.org/10.1002%2F047005588x},
-  year = 2006,
-  month = {apr},
-  publisher = {John Wiley {\&} Sons, Inc.},
-  author = {Feifang Hu and William F. Rosenberger},
-  title = {The Theory of Response-Adaptive Randomization in Clinical Trials}
+	doi = {10.1002/047005588x},
+	year = 2006,
+	month = {apr},
+	publisher = {John Wiley {\&} Sons, Inc.},
+	author = {Feifang Hu and William F. Rosenberger},
+	title = {The Theory of Response-Adaptive Randomization in Clinical Trials}
 }
 
 @article{Klein1999,
-  doi = {10.1016/s0377-0427(99)00156-9},
-  url = {https://doi.org/10.1016%2Fs0377-0427%2899%2900156-9},
-  year = 1999,
-  month = {sep},
-  publisher = {Elsevier {BV}},
-  volume = {109},
-  number = {1-2},
-  pages = {123--152},
-  author = {Richard I. Klein},
-  title = {Star formation with 3-D adaptive mesh refinement: the collapse and fragmentation of molecular clouds},
-  journal = {Journal of Computational and Applied Mathematics}
+	doi = {10.1016/s0377-0427(99)00156-9},
+	year = 1999,
+	month = {sep},
+	publisher = {Elsevier {BV}},
+	volume = {109},
+	number = {1-2},
+	pages = {123--152},
+	author = {Richard I. Klein},
+	title = {Star formation with 3-D adaptive mesh refinement: the collapse and fragmentation of molecular clouds},
+	journal = {Journal of Computational and Applied Mathematics}
 }
 
 @article{Nijholt2016,
-  doi = {10.1103/physrevb.93.235434},
-  url = {https://doi.org/10.1103%2Fphysrevb.93.235434},
-  year = 2016,
-  month = {jun},
-  publisher = {American Physical Society ({APS})},
-  volume = {93},
-  number = {23},
-  author = {Bas Nijholt and Anton R. Akhmerov},
-  title = {Orbital effect of magnetic field on the Majorana phase diagram},
-  journal = {Physical Review B}
+	doi = {10.1103/physrevb.93.235434},
+	year = 2016,
+	month = {jun},
+	publisher = {American Physical Society ({APS})},
+	volume = {93},
+	number = {23},
+	author = {Bas Nijholt and Anton R. Akhmerov},
+	title = {Orbital effect of magnetic field on the {M}ajorana phase diagram},
+	journal = {Phys. Rev. B}
 }
 
 @misc{Nijholt2019,
-  doi = {10.5281/zenodo.1182437},
-  url = {https://zenodo.org/record/1182437},
+  doi = {10.5281/ZENODO.1182437},
   author = {Nijholt, Bas and Weston, Joseph and {JornHoofwijk} and Akhmerov, Anton},
   title = {python-adaptive/adaptive: version 0.8.0},
   publisher = {Zenodo},
   year = {2019}
 }
 
+
 @article{Visvalingam1990,
-  i = {10.1111/j.1467-8659.1990.tb00398.x},
-  url = {https://doi.org/10.1111%2Fj.1467-8659.1990.tb00398.x},
-  year = 1990,
-  month = {sep},
-  publisher = {Wiley},
-  volume = {9},
-  number = {3},
-  pages = {213--225},
-  author = {M. Visvalingam and J. D. Whyatt},
-  title = {The Douglas-Peucker Algorithm for Line Simplification: Re-evaluation through Visualization},
-  journal = {Computer Graphics Forum}
-}
\ No newline at end of file
+	doi = {10.1111/j.1467-8659.1990.tb00398.x},
+	year = 1990,
+	month = {sep},
+	publisher = {Wiley},
+	volume = {9},
+	number = {3},
+	pages = {213--225},
+	author = {M. Visvalingam and J. D. Whyatt},
+	title = {The Douglas-Peucker Algorithm for Line Simplification: Re-evaluation through Visualization},
+	journal = {Computer Graphics Forum}
+}
+
diff --git a/paper.yaml b/paper.yaml
new file mode 100644
index 0000000..3ebf657
--- /dev/null
+++ b/paper.yaml
@@ -0,0 +1,16 @@
+Alliez2003: 10.1145/882262.882296
+Berger1984: 10.1016/0021-9991(84)90073-1
+Berger1989: 10.1016/0021-9991(89)90035-1
+Bommer2019: 10.1103/physrevlett.122.187702
+Chen2017: 10.1088/1361-6501/aa7d31
+Clenshaw1960: 10.1007/bf01386223
+DeRose1998: 10.1145/280814.280826
+Dyn1990: 10.1093/imanum/10.1.137
+Emery1998: 10.1088/0957-0233/9/6/003
+Gonnet2010: 10.1145/1824801.1824804
+Gramacy2004: 10.1145/1015330.1015367
+Hu2006: 10.1002/047005588x
+Klein1999: 10.1016/s0377-0427(99)00156-9
+Nijholt2016: 10.1103/physrevb.93.235434
+Nijholt2019: 10.5281/zenodo.1182437
+Visvalingam1990: 10.1111/j.1467-8659.1990.tb00398.x
-- 
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