[0KRunning with gitlab-runner 15.4.0 (43b2dc3d)[0;m
[0K on universal-tn4 d3cf9985[0;m
section_start:1714998063:prepare_executor
[0K[0K[36;1mPreparing the "docker" executor[0;m[0;m
[0KUsing Docker executor with image mambaorg/micromamba:1.4.3 ...[0;m
[0KAuthenticating with credentials from /root/.docker/config.json[0;m
[0KPulling docker image mambaorg/micromamba:1.4.3 ...[0;m
[0KUsing docker image sha256:bcfdda4930c6becbd40d3a8eb6d835e4d2275d16767fdd5000a25507d1c56b02 for mambaorg/micromamba:1.4.3 with digest mambaorg/micromamba@sha256:25b00e28c39abc2e698943c2279fa865d0ec7c97891c7faecafb5c6417313e71 ...[0;m
section_end:1714998075:prepare_executor
[0Ksection_start:1714998075:prepare_script
[0K[0K[36;1mPreparing environment[0;m[0;m
Running on runner-d3cf9985-project-3642-concurrent-1 via tnw-tn4.tudelft.net...
section_end:1714998080:prepare_script
[0Ksection_start:1714998080:get_sources
[0K[0K[36;1mGetting source from Git repository[0;m[0;m
[32;1mFetching changes with git depth set to 20...[0;m
Reinitialized existing Git repository in /builds/qt/kwant-scf/.git/
[32;1mChecking out f750ade0 as documentation...[0;m
Removing docs/build/
Removing htmlcov/
Removing memoryProfile.bin
Removing micromamba/
Removing public/
Removing pymf/_version.py
Removing timeProfile.html
[32;1mSkipping Git submodules setup[0;m
section_end:1714998098:get_sources
[0Ksection_start:1714998098:step_script
[0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m
[0KUsing docker image sha256:bcfdda4930c6becbd40d3a8eb6d835e4d2275d16767fdd5000a25507d1c56b02 for mambaorg/micromamba:1.4.3 with digest mambaorg/micromamba@sha256:25b00e28c39abc2e698943c2279fa865d0ec7c97891c7faecafb5c6417313e71 ...[0;m
[32;1m$ mkdir -p micromamba[0;m
[32;1m$ export MAMBA_ROOT_PREFIX=micromamba[0;m
[32;1m$ micromamba create -yf docs/environment.yml[0;m
__
__ ______ ___ ____ _____ ___ / /_ ____ _
/ / / / __ `__ \/ __ `/ __ `__ \/ __ \/ __ `/
/ /_/ / / / / / / /_/ / / / / / / /_/ / /_/ /
/ .___/_/ /_/ /_/\__,_/_/ /_/ /_/_.___/\__,_/
/_/
Transaction
Prefix: /builds/qt/kwant-scf/micromamba/envs/pymf-docs
Updating specs:
- python=3.11
- kwant
- myst-nb
- numpy
- scipy
- matplotlib-base
- sphinx-togglebutton
- sphinx-copybutton
- pip
- git
- make
Package Version Build Channel Size
─────────────────────────────────────────────────────────────────────────────────────────────────
Install:
─────────────────────────────────────────────────────────────────────────────────────────────────
+ _libgcc_mutex 0.1 conda_forge conda-forge 3kB
+ _openmp_mutex 4.5 2_gnu conda-forge 24kB
+ alabaster 0.7.16 pyhd8ed1ab_0 conda-forge 18kB
+ asttokens 2.4.1 pyhd8ed1ab_0 conda-forge 29kB
+ attrs 23.2.0 pyh71513ae_0 conda-forge 55kB
+ babel 2.14.0 pyhd8ed1ab_0 conda-forge 8MB
+ brotli 1.1.0 hd590300_1 conda-forge 19kB
+ brotli-bin 1.1.0 hd590300_1 conda-forge 19kB
+ brotli-python 1.1.0 py311hb755f60_1 conda-forge 351kB
+ bzip2 1.0.8 hd590300_5 conda-forge 254kB
+ c-ares 1.28.1 hd590300_0 conda-forge 169kB
+ ca-certificates 2024.2.2 hbcca054_0 conda-forge 155kB
+ certifi 2024.2.2 pyhd8ed1ab_0 conda-forge 161kB
+ charset-normalizer 3.3.2 pyhd8ed1ab_0 conda-forge 47kB
+ click 8.1.7 unix_pyh707e725_0 conda-forge 84kB
+ colorama 0.4.6 pyhd8ed1ab_0 conda-forge 25kB
+ comm 0.2.2 pyhd8ed1ab_0 conda-forge 12kB
+ contourpy 1.2.1 py311h9547e67_0 conda-forge 259kB
+ cycler 0.12.1 pyhd8ed1ab_0 conda-forge 13kB
+ debugpy 1.8.1 py311hb755f60_0 conda-forge 2MB
+ decorator 5.1.1 pyhd8ed1ab_0 conda-forge 12kB
+ docutils 0.21.2 pyhd8ed1ab_0 conda-forge 403kB
+ exceptiongroup 1.2.0 pyhd8ed1ab_2 conda-forge 21kB
+ executing 2.0.1 pyhd8ed1ab_0 conda-forge 28kB
+ fonttools 4.51.0 py311h459d7ec_0 conda-forge 3MB
+ freetype 2.12.1 h267a509_2 conda-forge 635kB
+ git 2.45.0 pl5321hef9f9f3_1 conda-forge 11MB
+ gmp 6.3.0 h59595ed_1 conda-forge 570kB
+ gmpy2 2.1.5 py311he48d604_0 conda-forge 203kB
+ greenlet 3.0.3 py311hb755f60_0 conda-forge 236kB
+ idna 3.7 pyhd8ed1ab_0 conda-forge 53kB
+ imagesize 1.4.1 pyhd8ed1ab_0 conda-forge 10kB
+ importlib-metadata 7.1.0 pyha770c72_0 conda-forge 27kB
+ importlib_metadata 7.1.0 hd8ed1ab_0 conda-forge 9kB
+ importlib_resources 6.4.0 pyhd8ed1ab_0 conda-forge 33kB
+ iniconfig 2.0.0 pyhd8ed1ab_0 conda-forge 11kB
+ ipykernel 6.29.3 pyhd33586a_0 conda-forge 119kB
+ ipython 8.22.2 pyh707e725_0 conda-forge 594kB
+ jedi 0.19.1 pyhd8ed1ab_0 conda-forge 841kB
+ jinja2 3.1.3 pyhd8ed1ab_0 conda-forge 112kB
+ jsonschema 4.22.0 pyhd8ed1ab_0 conda-forge 74kB
+ jsonschema-specifications 2023.12.1 pyhd8ed1ab_0 conda-forge 16kB
+ jupyter-cache 1.0.0 pyhd8ed1ab_0 conda-forge 31kB
+ jupyter_client 8.6.1 pyhd8ed1ab_0 conda-forge 106kB
+ jupyter_core 5.7.2 py311h38be061_0 conda-forge 95kB
+ keyutils 1.6.1 h166bdaf_0 conda-forge 118kB
+ kiwisolver 1.4.5 py311h9547e67_1 conda-forge 73kB
+ krb5 1.21.2 h659d440_0 conda-forge 1MB
+ kwant 1.4.4 nompi_py311hfed7191_102 conda-forge 1MB
+ lcms2 2.16 hb7c19ff_0 conda-forge 245kB
+ ld_impl_linux-64 2.40 h55db66e_0 conda-forge 713kB
+ lerc 4.0.0 h27087fc_0 conda-forge 282kB
+ libblas 3.9.0 22_linux64_openblas conda-forge 15kB
+ libbrotlicommon 1.1.0 hd590300_1 conda-forge 69kB
+ libbrotlidec 1.1.0 hd590300_1 conda-forge 33kB
+ libbrotlienc 1.1.0 hd590300_1 conda-forge 283kB
+ libcblas 3.9.0 22_linux64_openblas conda-forge 14kB
+ libcurl 8.7.1 hca28451_0 conda-forge 398kB
+ libdeflate 1.20 hd590300_0 conda-forge 72kB
+ libedit 3.1.20191231 he28a2e2_2 conda-forge 124kB
+ libev 4.33 hd590300_2 conda-forge 113kB
+ libexpat 2.6.2 h59595ed_0 conda-forge 74kB
+ libffi 3.4.2 h7f98852_5 conda-forge 58kB
+ libgcc-ng 13.2.0 h77fa898_6 conda-forge 778kB
+ libgfortran-ng 13.2.0 h69a702a_6 conda-forge 24kB
+ libgfortran5 13.2.0 h43f5ff8_6 conda-forge 1MB
+ libgomp 13.2.0 h77fa898_6 conda-forge 420kB
+ libiconv 1.17 hd590300_2 conda-forge 706kB
+ libjpeg-turbo 3.0.0 hd590300_1 conda-forge 619kB
+ liblapack 3.9.0 22_linux64_openblas conda-forge 14kB
+ libnghttp2 1.58.0 h47da74e_1 conda-forge 632kB
+ libnsl 2.0.1 hd590300_0 conda-forge 33kB
+ libopenblas 0.3.27 pthreads_h413a1c8_0 conda-forge 6MB
+ libpng 1.6.43 h2797004_0 conda-forge 288kB
+ libscotch 7.0.4 h91e35bf_1 conda-forge 340kB
+ libsodium 1.0.18 h36c2ea0_1 conda-forge 375kB
+ libsqlite 3.45.3 h2797004_0 conda-forge 860kB
+ libssh2 1.11.0 h0841786_0 conda-forge 271kB
+ libstdcxx-ng 13.2.0 hc0a3c3a_6 conda-forge 4MB
+ libtiff 4.6.0 h1dd3fc0_3 conda-forge 283kB
+ libuuid 2.38.1 h0b41bf4_0 conda-forge 34kB
+ libwebp-base 1.4.0 hd590300_0 conda-forge 439kB
+ libxcb 1.15 h0b41bf4_0 conda-forge 384kB
+ libxcrypt 4.4.36 hd590300_1 conda-forge 100kB
+ libzlib 1.2.13 hd590300_5 conda-forge 62kB
+ make 4.3 hd18ef5c_1 conda-forge 519kB
+ markdown-it-py 3.0.0 pyhd8ed1ab_0 conda-forge 64kB
+ markupsafe 2.1.5 py311h459d7ec_0 conda-forge 28kB
+ matplotlib-base 3.8.4 py311h54ef318_0 conda-forge 8MB
+ matplotlib-inline 0.1.7 pyhd8ed1ab_0 conda-forge 15kB
+ mdit-py-plugins 0.4.0 pyhd8ed1ab_0 conda-forge 41kB
+ mdurl 0.1.2 pyhd8ed1ab_0 conda-forge 15kB
+ metis 5.1.0 h59595ed_1007 conda-forge 4MB
+ mpc 1.3.1 hfe3b2da_0 conda-forge 116kB
+ mpfr 4.2.1 h9458935_1 conda-forge 643kB
+ mpmath 1.3.0 pyhd8ed1ab_0 conda-forge 438kB
+ mumps-include 5.6.2 ha770c72_4 conda-forge 27kB
+ mumps-seq 5.6.2 hfef103a_4 conda-forge 2MB
+ munkres 1.1.4 pyh9f0ad1d_0 conda-forge 12kB
+ myst-nb 1.1.0 pyhd8ed1ab_0 conda-forge 63kB
+ myst-parser 3.0.1 pyhd8ed1ab_0 conda-forge 72kB
+ nbclient 0.10.0 pyhd8ed1ab_0 conda-forge 28kB
+ nbformat 5.10.4 pyhd8ed1ab_0 conda-forge 101kB
+ ncurses 6.4.20240210 h59595ed_0 conda-forge 896kB
+ nest-asyncio 1.6.0 pyhd8ed1ab_0 conda-forge 12kB
+ numpy 1.26.4 py311h64a7726_0 conda-forge 8MB
+ openjpeg 2.5.2 h488ebb8_0 conda-forge 342kB
+ openssl 3.3.0 hd590300_0 conda-forge 3MB
+ packaging 24.0 pyhd8ed1ab_0 conda-forge 50kB
+ parso 0.8.4 pyhd8ed1ab_0 conda-forge 75kB
+ pcre2 10.43 hcad00b1_0 conda-forge 951kB
+ perl 5.32.1 7_hd590300_perl5 conda-forge 13MB
+ pexpect 4.9.0 pyhd8ed1ab_0 conda-forge 54kB
+ pickleshare 0.7.5 py_1003 conda-forge 9kB
+ pillow 10.3.0 py311h18e6fac_0 conda-forge 43MB
+ pip 24.0 pyhd8ed1ab_0 conda-forge 1MB
+ pkgutil-resolve-name 1.3.10 pyhd8ed1ab_1 conda-forge 11kB
+ platformdirs 4.2.1 pyhd8ed1ab_0 conda-forge 20kB
+ pluggy 1.5.0 pyhd8ed1ab_0 conda-forge 24kB
+ prompt-toolkit 3.0.42 pyha770c72_0 conda-forge 270kB
+ psutil 5.9.8 py311h459d7ec_0 conda-forge 506kB
+ pthread-stubs 0.4 h36c2ea0_1001 conda-forge 6kB
+ ptyprocess 0.7.0 pyhd3deb0d_0 conda-forge 17kB
+ pure_eval 0.2.2 pyhd8ed1ab_0 conda-forge 15kB
+ pygments 2.18.0 pyhd8ed1ab_0 conda-forge 879kB
+ pyparsing 3.1.2 pyhd8ed1ab_0 conda-forge 89kB
+ pysocks 1.7.1 pyha2e5f31_6 conda-forge 19kB
+ pytest 8.2.0 pyhd8ed1ab_0 conda-forge 257kB
+ python 3.11.9 hb806964_0_cpython conda-forge 31MB
+ python-dateutil 2.9.0 pyhd8ed1ab_0 conda-forge 223kB
+ python-fastjsonschema 2.19.1 pyhd8ed1ab_0 conda-forge 225kB
+ python_abi 3.11 4_cp311 conda-forge 6kB
+ pytz 2024.1 pyhd8ed1ab_0 conda-forge 189kB
+ pyyaml 6.0.1 py311h459d7ec_1 conda-forge 201kB
+ pyzmq 26.0.2 py311h08a0b41_0 conda-forge 474kB
+ qsymm 1.4.0 pyhd8ed1ab_0 conda-forge 71kB
+ readline 8.2 h8228510_1 conda-forge 281kB
+ referencing 0.35.1 pyhd8ed1ab_0 conda-forge 42kB
+ requests 2.31.0 pyhd8ed1ab_0 conda-forge 57kB
+ rpds-py 0.18.0 py311h46250e7_0 conda-forge 916kB
+ scipy 1.13.0 py311h517d4fd_1 conda-forge 17MB
+ scotch 7.0.4 h23d43cc_1 conda-forge 92kB
+ setuptools 69.5.1 pyhd8ed1ab_0 conda-forge 502kB
+ six 1.16.0 pyh6c4a22f_0 conda-forge 14kB
+ snowballstemmer 2.2.0 pyhd8ed1ab_0 conda-forge 59kB
+ sphinx 7.3.7 pyhd8ed1ab_0 conda-forge 1MB
+ sphinx-copybutton 0.5.2 pyhd8ed1ab_0 conda-forge 18kB
+ sphinx-togglebutton 0.3.2 pyhd8ed1ab_0 conda-forge 12kB
+ sphinxcontrib-applehelp 1.0.8 pyhd8ed1ab_0 conda-forge 30kB
+ sphinxcontrib-devhelp 1.0.6 pyhd8ed1ab_0 conda-forge 24kB
+ sphinxcontrib-htmlhelp 2.0.5 pyhd8ed1ab_0 conda-forge 33kB
+ sphinxcontrib-jsmath 1.0.1 pyhd8ed1ab_0 conda-forge 10kB
+ sphinxcontrib-qthelp 1.0.7 pyhd8ed1ab_0 conda-forge 27kB
+ sphinxcontrib-serializinghtml 1.1.10 pyhd8ed1ab_0 conda-forge 29kB
+ sqlalchemy 2.0.30 py311h331c9d8_0 conda-forge 4MB
+ stack_data 0.6.2 pyhd8ed1ab_0 conda-forge 26kB
+ sympy 1.12 pypyh9d50eac_103 conda-forge 4MB
+ tabulate 0.9.0 pyhd8ed1ab_1 conda-forge 36kB
+ tinyarray 1.2.4 py311h320fe9a_3 conda-forge 61kB
+ tk 8.6.13 noxft_h4845f30_101 conda-forge 3MB
+ tomli 2.0.1 pyhd8ed1ab_0 conda-forge 16kB
+ tornado 6.4 py311h459d7ec_0 conda-forge 853kB
+ traitlets 5.14.3 pyhd8ed1ab_0 conda-forge 110kB
+ typing-extensions 4.11.0 hd8ed1ab_0 conda-forge 10kB
+ typing_extensions 4.11.0 pyha770c72_0 conda-forge 38kB
+ tzdata 2024a h0c530f3_0 conda-forge 120kB
+ urllib3 2.2.1 pyhd8ed1ab_0 conda-forge 95kB
+ wcwidth 0.2.13 pyhd8ed1ab_0 conda-forge 33kB
+ wheel 0.43.0 pyhd8ed1ab_1 conda-forge 58kB
+ xorg-libxau 1.0.11 hd590300_0 conda-forge 14kB
+ xorg-libxdmcp 1.1.3 h7f98852_0 conda-forge 19kB
+ xz 5.2.6 h166bdaf_0 conda-forge 418kB
+ yaml 0.2.5 h7f98852_2 conda-forge 89kB
+ zeromq 4.3.5 h75354e8_3 conda-forge 352kB
+ zipp 3.17.0 pyhd8ed1ab_0 conda-forge 19kB
+ zlib 1.2.13 hd590300_5 conda-forge 93kB
+ zstd 1.5.6 ha6fb4c9_0 conda-forge 555kB
Summary:
Install: 177 packages
Total download: 208MB
─────────────────────────────────────────────────────────────────────────────────────────────────
Transaction starting
Linking python_abi-3.11-4_cp311
Linking ca-certificates-2024.2.2-hbcca054_0
Linking mumps-include-5.6.2-ha770c72_4
Linking _libgcc_mutex-0.1-conda_forge
Linking libstdcxx-ng-13.2.0-hc0a3c3a_6
Linking ld_impl_linux-64-2.40-h55db66e_0
Linking libgomp-13.2.0-h77fa898_6
Linking _openmp_mutex-4.5-2_gnu
Linking libgcc-ng-13.2.0-h77fa898_6
Linking xorg-libxdmcp-1.1.3-h7f98852_0
Linking pthread-stubs-0.4-h36c2ea0_1001
Linking libsodium-1.0.18-h36c2ea0_1
Linking c-ares-1.28.1-hd590300_0
Linking libev-4.33-hd590300_2
Linking gmp-6.3.0-h59595ed_1
Linking metis-5.1.0-h59595ed_1007
Linking libwebp-base-1.4.0-hd590300_0
Linking libbrotlicommon-1.1.0-hd590300_1
Linking libiconv-1.17-hd590300_2
Linking libdeflate-1.20-hd590300_0
Linking lerc-4.0.0-h27087fc_0
Linking libjpeg-turbo-3.0.0-hd590300_1
Linking xorg-libxau-1.0.11-hd590300_0
Linking libxcrypt-4.4.36-hd590300_1
Linking libzlib-1.2.13-hd590300_5
Linking libffi-3.4.2-h7f98852_5
Linking bzip2-1.0.8-hd590300_5
Linking yaml-0.2.5-h7f98852_2
Linking libgfortran5-13.2.0-h43f5ff8_6
Linking make-4.3-hd18ef5c_1
Linking keyutils-1.6.1-h166bdaf_0
Linking openssl-3.3.0-hd590300_0
Linking ncurses-6.4.20240210-h59595ed_0
Linking libuuid-2.38.1-h0b41bf4_0
Linking libnsl-2.0.1-hd590300_0
Linking libexpat-2.6.2-h59595ed_0
Linking xz-5.2.6-h166bdaf_0
Linking mpfr-4.2.1-h9458935_1
Linking libbrotlienc-1.1.0-hd590300_1
Linking libbrotlidec-1.1.0-hd590300_1
Linking libxcb-1.15-h0b41bf4_0
Linking perl-5.32.1-7_hd590300_perl5
Linking zlib-1.2.13-hd590300_5
Linking zstd-1.5.6-ha6fb4c9_0
Linking libpng-1.6.43-h2797004_0
Linking tk-8.6.13-noxft_h4845f30_101
Linking libsqlite-3.45.3-h2797004_0
Linking pcre2-10.43-hcad00b1_0
Linking libgfortran-ng-13.2.0-h69a702a_6
Linking libnghttp2-1.58.0-h47da74e_1
Linking libssh2-1.11.0-h0841786_0
Linking libedit-3.1.20191231-he28a2e2_2
Linking readline-8.2-h8228510_1
Linking mpc-1.3.1-hfe3b2da_0
Linking brotli-bin-1.1.0-hd590300_1
Linking libtiff-4.6.0-h1dd3fc0_3
Linking freetype-2.12.1-h267a509_2
Linking libscotch-7.0.4-h91e35bf_1
Linking libopenblas-0.3.27-pthreads_h413a1c8_0
Linking krb5-1.21.2-h659d440_0
Linking brotli-1.1.0-hd590300_1
Linking openjpeg-2.5.2-h488ebb8_0
Linking lcms2-2.16-hb7c19ff_0
Linking scotch-7.0.4-h23d43cc_1
Linking libblas-3.9.0-22_linux64_openblas
Linking zeromq-4.3.5-h75354e8_3
Linking libcurl-8.7.1-hca28451_0
Linking libcblas-3.9.0-22_linux64_openblas
Linking liblapack-3.9.0-22_linux64_openblas
Linking git-2.45.0-pl5321hef9f9f3_1
Linking mumps-seq-5.6.2-hfef103a_4
Linking tzdata-2024a-h0c530f3_0
Linking python-3.11.9-hb806964_0_cpython
Linking wheel-0.43.0-pyhd8ed1ab_1
Linking setuptools-69.5.1-pyhd8ed1ab_0
Linking pip-24.0-pyhd8ed1ab_0
Linking sphinxcontrib-jsmath-1.0.1-pyhd8ed1ab_0
Linking parso-0.8.4-pyhd8ed1ab_0
Linking pkgutil-resolve-name-1.3.10-pyhd8ed1ab_1
Linking python-fastjsonschema-2.19.1-pyhd8ed1ab_0
Linking ptyprocess-0.7.0-pyhd3deb0d_0
Linking wcwidth-0.2.13-pyhd8ed1ab_0
Linking iniconfig-2.0.0-pyhd8ed1ab_0
Linking six-1.16.0-pyh6c4a22f_0
Linking pure_eval-0.2.2-pyhd8ed1ab_0
Linking executing-2.0.1-pyhd8ed1ab_0
Linking mpmath-1.3.0-pyhd8ed1ab_0
Linking munkres-1.1.4-pyh9f0ad1d_0
Linking platformdirs-4.2.1-pyhd8ed1ab_0
Linking pluggy-1.5.0-pyhd8ed1ab_0
Linking pyparsing-3.1.2-pyhd8ed1ab_0
Linking cycler-0.12.1-pyhd8ed1ab_0
Linking pytz-2024.1-pyhd8ed1ab_0
Linking zipp-3.17.0-pyhd8ed1ab_0
Linking nest-asyncio-1.6.0-pyhd8ed1ab_0
Linking traitlets-5.14.3-pyhd8ed1ab_0
Linking exceptiongroup-1.2.0-pyhd8ed1ab_2
Linking decorator-5.1.1-pyhd8ed1ab_0
Linking tabulate-0.9.0-pyhd8ed1ab_1
Linking click-8.1.7-unix_pyh707e725_0
Linking attrs-23.2.0-pyh71513ae_0
Linking mdurl-0.1.2-pyhd8ed1ab_0
Linking typing_extensions-4.11.0-pyha770c72_0
Linking pickleshare-0.7.5-py_1003
Linking charset-normalizer-3.3.2-pyhd8ed1ab_0
Linking pysocks-1.7.1-pyha2e5f31_6
Linking idna-3.7-pyhd8ed1ab_0
Linking certifi-2024.2.2-pyhd8ed1ab_0
Linking pygments-2.18.0-pyhd8ed1ab_0
Linking alabaster-0.7.16-pyhd8ed1ab_0
Linking tomli-2.0.1-pyhd8ed1ab_0
Linking snowballstemmer-2.2.0-pyhd8ed1ab_0
Linking packaging-24.0-pyhd8ed1ab_0
Linking imagesize-1.4.1-pyhd8ed1ab_0
Linking colorama-0.4.6-pyhd8ed1ab_0
Linking docutils-0.21.2-pyhd8ed1ab_0
Linking jedi-0.19.1-pyhd8ed1ab_0
Linking pexpect-4.9.0-pyhd8ed1ab_0
Linking prompt-toolkit-3.0.42-pyha770c72_0
Linking asttokens-2.4.1-pyhd8ed1ab_0
Linking python-dateutil-2.9.0-pyhd8ed1ab_0
Linking babel-2.14.0-pyhd8ed1ab_0
Linking importlib_resources-6.4.0-pyhd8ed1ab_0
Linking importlib-metadata-7.1.0-pyha770c72_0
Linking comm-0.2.2-pyhd8ed1ab_0
Linking matplotlib-inline-0.1.7-pyhd8ed1ab_0
Linking markdown-it-py-3.0.0-pyhd8ed1ab_0
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Transaction finished
To activate this environment, use:
micromamba activate pymf-docs
Or to execute a single command in this environment, use:
micromamba run -n pymf-docs mycommand
Installing pip packages: sphinx-book-theme>=1.1.0, sphinx-tippy, ..
Processing /builds/qt/kwant-scf
Installing build dependencies: started
Installing build dependencies: finished with status 'done'
Getting requirements to build wheel: started
Getting requirements to build wheel: finished with status 'done'
Preparing metadata (pyproject.toml): started
Preparing metadata (pyproject.toml): finished with status 'done'
Collecting sphinx-book-theme>=1.1.0 (from -r /builds/qt/kwant-scf/docs/mambaf8snWuBOODh (line 1))
Downloading sphinx_book_theme-1.1.2-py3-none-any.whl.metadata (5.7 kB)
Collecting sphinx-tippy (from -r /builds/qt/kwant-scf/docs/mambaf8snWuBOODh (line 2))
Downloading sphinx_tippy-0.4.3-py3-none-any.whl.metadata (1.2 kB)
Requirement already satisfied: sphinx>=5 in /builds/qt/kwant-scf/micromamba/envs/pymf-docs/lib/python3.11/site-packages (from sphinx-book-theme>=1.1.0->-r /builds/qt/kwant-scf/docs/mambaf8snWuBOODh (line 1)) (7.3.7)
Collecting pydata-sphinx-theme>=0.14 (from sphinx-book-theme>=1.1.0->-r /builds/qt/kwant-scf/docs/mambaf8snWuBOODh (line 1))
Downloading pydata_sphinx_theme-0.15.2-py3-none-any.whl.metadata (7.3 kB)
Collecting beautifulsoup4 (from sphinx-tippy->-r /builds/qt/kwant-scf/docs/mambaf8snWuBOODh (line 2))
Downloading beautifulsoup4-4.12.3-py3-none-any.whl.metadata (3.8 kB)
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Collecting accessible-pygments (from pydata-sphinx-theme>=0.14->sphinx-book-theme>=1.1.0->-r /builds/qt/kwant-scf/docs/mambaf8snWuBOODh (line 1))
Downloading accessible_pygments-0.0.4-py2.py3-none-any.whl.metadata (6.0 kB)
Requirement already satisfied: typing-extensions in /builds/qt/kwant-scf/micromamba/envs/pymf-docs/lib/python3.11/site-packages (from pydata-sphinx-theme>=0.14->sphinx-book-theme>=1.1.0->-r /builds/qt/kwant-scf/docs/mambaf8snWuBOODh (line 1)) (4.11.0)
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Requirement already satisfied: sphinxcontrib-jsmath in /builds/qt/kwant-scf/micromamba/envs/pymf-docs/lib/python3.11/site-packages (from sphinx>=5->sphinx-book-theme>=1.1.0->-r /builds/qt/kwant-scf/docs/mambaf8snWuBOODh (line 1)) (1.0.1)
Requirement already satisfied: sphinxcontrib-htmlhelp>=2.0.0 in /builds/qt/kwant-scf/micromamba/envs/pymf-docs/lib/python3.11/site-packages (from sphinx>=5->sphinx-book-theme>=1.1.0->-r /builds/qt/kwant-scf/docs/mambaf8snWuBOODh (line 1)) (2.0.5)
Requirement already satisfied: sphinxcontrib-serializinghtml>=1.1.9 in /builds/qt/kwant-scf/micromamba/envs/pymf-docs/lib/python3.11/site-packages (from sphinx>=5->sphinx-book-theme>=1.1.0->-r /builds/qt/kwant-scf/docs/mambaf8snWuBOODh (line 1)) (1.1.10)
Requirement already satisfied: sphinxcontrib-qthelp in /builds/qt/kwant-scf/micromamba/envs/pymf-docs/lib/python3.11/site-packages (from sphinx>=5->sphinx-book-theme>=1.1.0->-r /builds/qt/kwant-scf/docs/mambaf8snWuBOODh (line 1)) (1.0.7)
Requirement already satisfied: snowballstemmer>=2.0 in /builds/qt/kwant-scf/micromamba/envs/pymf-docs/lib/python3.11/site-packages (from sphinx>=5->sphinx-book-theme>=1.1.0->-r /builds/qt/kwant-scf/docs/mambaf8snWuBOODh (line 1)) (2.2.0)
Requirement already satisfied: alabaster~=0.7.14 in /builds/qt/kwant-scf/micromamba/envs/pymf-docs/lib/python3.11/site-packages (from sphinx>=5->sphinx-book-theme>=1.1.0->-r /builds/qt/kwant-scf/docs/mambaf8snWuBOODh (line 1)) (0.7.16)
Requirement already satisfied: imagesize>=1.3 in /builds/qt/kwant-scf/micromamba/envs/pymf-docs/lib/python3.11/site-packages (from sphinx>=5->sphinx-book-theme>=1.1.0->-r /builds/qt/kwant-scf/docs/mambaf8snWuBOODh (line 1)) (1.4.1)
Requirement already satisfied: MarkupSafe>=2.0 in /builds/qt/kwant-scf/micromamba/envs/pymf-docs/lib/python3.11/site-packages (from jinja2->sphinx-tippy->-r /builds/qt/kwant-scf/docs/mambaf8snWuBOODh (line 2)) (2.1.5)
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Requirement already satisfied: urllib3<3,>=1.21.1 in /builds/qt/kwant-scf/micromamba/envs/pymf-docs/lib/python3.11/site-packages (from requests->sphinx-tippy->-r /builds/qt/kwant-scf/docs/mambaf8snWuBOODh (line 2)) (2.2.1)
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Collecting soupsieve>1.2 (from beautifulsoup4->sphinx-tippy->-r /builds/qt/kwant-scf/docs/mambaf8snWuBOODh (line 2))
Downloading soupsieve-2.5-py3-none-any.whl.metadata (4.7 kB)
Downloading sphinx_book_theme-1.1.2-py3-none-any.whl (400 kB)
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Downloading beautifulsoup4-4.12.3-py3-none-any.whl (147 kB)
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Downloading soupsieve-2.5-py3-none-any.whl (36 kB)
Downloading accessible_pygments-0.0.4-py2.py3-none-any.whl (29 kB)
Building wheels for collected packages: pymf
Building wheel for pymf (pyproject.toml): started
Building wheel for pymf (pyproject.toml): finished with status 'done'
Created wheel for pymf: filename=pymf-0.1.dev59+gf750ade-py3-none-any.whl size=17188 sha256=4d15b17bb1b5943b57c20bd4b1d53bbe25704d147e282bba28d96313ec8da907
Stored in directory: /home/mambauser/.cache/pip/wheels/5b/06/10/8869722029570f6f33627b817da751714f487bfb77cdb04f2f
Successfully built pymf
Installing collected packages: soupsieve, accessible-pygments, pymf, beautifulsoup4, sphinx-tippy, pydata-sphinx-theme, sphinx-book-theme
Successfully installed accessible-pygments-0.0.4 beautifulsoup4-4.12.3 pydata-sphinx-theme-0.15.2 pymf-0.1.dev59+gf750ade soupsieve-2.5 sphinx-book-theme-1.1.2 sphinx-tippy-0.4.3
[32;1m$ eval "$(micromamba shell hook --shell bash)"[0;m
[32;1m$ micromamba activate pymf-docs[0;m
[32;1m$ pip install memray pyinstrument[0;m
Collecting memray
Downloading memray-1.12.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (19 kB)
Collecting pyinstrument
Downloading pyinstrument-4.6.2-cp311-cp311-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (21 kB)
Requirement already satisfied: jinja2>=2.9 in ./micromamba/envs/pymf-docs/lib/python3.11/site-packages (from memray) (3.1.3)
Collecting rich>=11.2.0 (from memray)
Downloading rich-13.7.1-py3-none-any.whl.metadata (18 kB)
Collecting textual>=0.41.0 (from memray)
Downloading textual-0.58.1-py3-none-any.whl.metadata (5.6 kB)
Requirement already satisfied: MarkupSafe>=2.0 in ./micromamba/envs/pymf-docs/lib/python3.11/site-packages (from jinja2>=2.9->memray) (2.1.5)
Requirement already satisfied: markdown-it-py>=2.2.0 in ./micromamba/envs/pymf-docs/lib/python3.11/site-packages (from rich>=11.2.0->memray) (3.0.0)
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Requirement already satisfied: mdurl~=0.1 in ./micromamba/envs/pymf-docs/lib/python3.11/site-packages (from markdown-it-py>=2.2.0->rich>=11.2.0->memray) (0.1.2)
Collecting linkify-it-py<3,>=1 (from markdown-it-py[linkify,plugins]>=2.1.0->textual>=0.41.0->memray)
Downloading linkify_it_py-2.0.3-py3-none-any.whl.metadata (8.5 kB)
Requirement already satisfied: mdit-py-plugins in ./micromamba/envs/pymf-docs/lib/python3.11/site-packages (from markdown-it-py[linkify,plugins]>=2.1.0->textual>=0.41.0->memray) (0.4.0)
Collecting uc-micro-py (from linkify-it-py<3,>=1->markdown-it-py[linkify,plugins]>=2.1.0->textual>=0.41.0->memray)
Downloading uc_micro_py-1.0.3-py3-none-any.whl.metadata (2.0 kB)
Downloading memray-1.12.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.9 MB)
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Downloading pyinstrument-4.6.2-cp311-cp311-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (104 kB)
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Downloading rich-13.7.1-py3-none-any.whl (240 kB)
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Downloading textual-0.58.1-py3-none-any.whl (549 kB)
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Downloading linkify_it_py-2.0.3-py3-none-any.whl (19 kB)
Downloading uc_micro_py-1.0.3-py3-none-any.whl (6.2 kB)
Installing collected packages: uc-micro-py, pyinstrument, rich, linkify-it-py, textual, memray
Successfully installed linkify-it-py-2.0.3 memray-1.12.0 pyinstrument-4.6.2 rich-13.7.1 textual-0.58.1 uc-micro-py-1.0.3
[32;1m$ python profiling/graphene.py[0;m
Single SCF loop takes 3.5621881328523157 whereas a single diagonalization of a corresponding system takes 1.9322246473282576
[32;1m$ memray stats memoryProfile.bin[0;m
📏 Total allocations:
368658
📦 Total memory allocated:
1.267GB
📊 Histogram of allocation size:
min: 1.000B
---------------------------------------------
< 7.000B : 2 ▇
< 54.000B : 358835 ▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇▇
< 397.000B : 56 ▇
< 2.852KB : 60 ▇
< 20.963KB : 9614 ▇
< 154.102KB: 8 ▇
< 1.106MB : 57 ▇
< 8.132MB : 12 ▇
< 59.781MB : 8 ▇
<=439.453MB: 6 ▇
---------------------------------------------
max: 439.453MB
📂 Allocator type distribution:
MALLOC: 368601
MMAP: 55
REALLOC: 2
🥇 Top 5 largest allocating locations (by size):
- tb_to_khamvector:/builds/qt/kwant-scf/micromamba/envs/pymf-docs/lib/python3.11/site-packages/pymf/tb/transforms.py:37 -> 439.704MB
- c2cn:/builds/qt/kwant-scf/micromamba/envs/pymf-docs/lib/python3.11/site-packages/scipy/fft/_pocketfft/basic.py:149 -> 264.306MB
- construct_density_matrix_kgrid:/builds/qt/kwant-scf/micromamba/envs/pymf-docs/lib/python3.11/site-packages/pymf/mf.py:28 -> 175.782MB
- <dictcomp>:/builds/qt/kwant-scf/micromamba/envs/pymf-docs/lib/python3.11/site-packages/pymf/tb/transforms.py:57 -> 105.833MB
- eigh:/builds/qt/kwant-scf/micromamba/envs/pymf-docs/lib/python3.11/site-packages/numpy/linalg/linalg.py:1487 -> 98.880MB
🥇 Top 5 largest allocating locations (by number of allocations):
- <dictcomp>:/builds/qt/kwant-scf/micromamba/envs/pymf-docs/lib/python3.11/site-packages/pymf/tb/transforms.py:57 -> 358867
- c2cn:/builds/qt/kwant-scf/micromamba/envs/pymf-docs/lib/python3.11/site-packages/scipy/fft/_pocketfft/basic.py:149 -> 9634
- <dictcomp>:/builds/qt/kwant-scf/micromamba/envs/pymf-docs/lib/python3.11/site-packages/pymf/tb/tb.py:19 -> 28
- einsum:/builds/qt/kwant-scf/micromamba/envs/pymf-docs/lib/python3.11/site-packages/numpy/core/einsumfunc.py:1371 -> 20
- <dictcomp>:/builds/qt/kwant-scf/micromamba/envs/pymf-docs/lib/python3.11/site-packages/pymf/mf.py:95 -> 12
[32;1m$ memray summary memoryProfile.bin[0;m
┏━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━┳━━━━━━━━┳━━━━━━━┳━━━━━━━┳━━━━━━━┳━━━━━━━┓
┃ ┃ ┃ Total ┃ ┃ Own ┃ ┃
┃ ┃ <Total ┃ Memo… ┃ Own ┃ Memo… ┃ Allo… ┃
┃ Location ┃ Memor… ┃ % ┃ Memo… ┃ % ┃ Count ┃
┡━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━╇━━━━━━━━╇━━━━━━━╇━━━━━━━╇━━━━━━━╇━━━━━━━┩
│ mfield at │ 560.4… │ 100.… │ 0.00… │ 0.00% │ 18 │
│ /builds/qt/kwant-scf/micromamba/en… │ │ │ │ │ │
│ scf_loop at │ 560.4… │ 100.… │ 0.00… │ 0.00% │ 18 │
│ /builds/qt/kwant-scf/profiling/gra… │ │ │ │ │ │
│ <module> at │ 560.4… │ 100.… │ 0.00… │ 0.00% │ 18 │
│ /builds/qt/kwant-scf/profiling/gra… │ │ │ │ │ │
│ construct_density_matrix at │ 439.4… │ 78.4… │ 892.… │ 0.00% │ 3 │
│ /builds/qt/kwant-scf/micromamba/en… │ │ │ │ │ │
│ tb_to_khamvector at │ 439.4… │ 78.4… │ 439.… │ 78.4… │ 2 │
│ /builds/qt/kwant-scf/micromamba/en… │ │ │ │ │ │
│ _wrapreduction at │ 88.01… │ 15.7… │ 88.0… │ 15.7… │ 4 │
│ /builds/qt/kwant-scf/micromamba/en… │ │ │ │ │ │
│ sum at │ 88.01… │ 15.7… │ 0.00… │ 0.00% │ 4 │
│ /builds/qt/kwant-scf/micromamba/en… │ │ │ │ │ │
│ meshgrid at │ 5.493… │ 0.98% │ 0.00… │ 0.00% │ 4 │
│ /builds/qt/kwant-scf/micromamba/en… │ │ │ │ │ │
│ <listcomp> at │ 5.493… │ 0.98% │ 5.49… │ 0.98% │ 2 │
│ /builds/qt/kwant-scf/micromamba/en… │ │ │ │ │ │
│ _broadcast_to at │ 64.00… │ 0.00% │ 64.0… │ 0.00% │ 2 │
│ /builds/qt/kwant-scf/micromamba/en… │ │ │ │ │ │
│ <listcomp> at │ 64.00… │ 0.00% │ 0.00… │ 0.00% │ 2 │
│ /builds/qt/kwant-scf/micromamba/en… │ │ │ │ │ │
│ broadcast_arrays at │ 64.00… │ 0.00% │ 0.00… │ 0.00% │ 2 │
│ /builds/qt/kwant-scf/micromamba/en… │ │ │ │ │ │
│ tensordot at │ 48.00… │ 0.00% │ 48.0… │ 0.00% │ 1 │
│ /builds/qt/kwant-scf/micromamba/en… │ │ │ │ │ │
└─────────────────────────────────────┴────────┴───────┴───────┴───────┴───────┘
section_end:1714998273:step_script
[0Ksection_start:1714998273:upload_artifacts_on_success
[0K[0K[36;1mUploading artifacts for successful job[0;m[0;m
[32;1mUploading artifacts...[0;m
timeProfile.html: found 1 matching files and directories[0;m
memoryProfile.bin: found 1 matching files and directories[0;m
Uploading artifacts as "archive" to coordinator... 201 Created[0;m id[0;m=422755 responseStatus[0;m=201 Created token[0;m=glcbt-64
section_end:1714998278:upload_artifacts_on_success
[0Ksection_start:1714998278:cleanup_file_variables
[0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m
section_end:1714998281:cleanup_file_variables
[0K[32;1mJob succeeded[0;m