Running with gitlab-runner 15.4.0 (43b2dc3d)
  on universal-tn4 d3cf9985
section_start:1714998064:prepare_executor
Preparing the "docker" executor
Using Docker executor with image mambaorg/micromamba:1.4.3 ...
Authenticating with credentials from /root/.docker/config.json
Pulling docker image mambaorg/micromamba:1.4.3 ...
Using docker image sha256:bcfdda4930c6becbd40d3a8eb6d835e4d2275d16767fdd5000a25507d1c56b02 for mambaorg/micromamba:1.4.3 with digest mambaorg/micromamba@sha256:25b00e28c39abc2e698943c2279fa865d0ec7c97891c7faecafb5c6417313e71 ...
section_end:1714998080:prepare_executor
section_start:1714998080:prepare_script
Preparing environment
Running on runner-d3cf9985-project-3642-concurrent-3 via tnw-tn4.tudelft.net...
section_end:1714998092:prepare_script
section_start:1714998092:get_sources
Getting source from Git repository
Fetching changes with git depth set to 20...
Reinitialized existing Git repository in /builds/qt/kwant-scf/.git/
Checking out f750ade0 as documentation...
Removing .pre-commit-cache/
Removing micromamba/
Removing pymf/_version.py

Skipping Git submodules setup
section_end:1714998111:get_sources
section_start:1714998111:restore_cache
Restoring cache
Checking cache for run pre-commit-non_protected...
No URL provided, cache will not be downloaded from shared cache server. Instead a local version of cache will be extracted. 
WARNING: micromamba/pkgs/_openmp_mutex-4.5-2_gnu/lib/libgomp.so.1: chmod micromamba/pkgs/_openmp_mutex-4.5-2_gnu/lib/libgomp.so.1: no such file or directory (suppressing repeats) 
Successfully extracted cache
section_end:1714998171:restore_cache
section_start:1714998171:step_script
Executing "step_script" stage of the job script
Using docker image sha256:bcfdda4930c6becbd40d3a8eb6d835e4d2275d16767fdd5000a25507d1c56b02 for mambaorg/micromamba:1.4.3 with digest mambaorg/micromamba@sha256:25b00e28c39abc2e698943c2279fa865d0ec7c97891c7faecafb5c6417313e71 ...
$ mkdir -p micromamba
$ export MAMBA_ROOT_PREFIX=micromamba
$ micromamba create -yf docs/environment.yml

                                           __
          __  ______ ___  ____ _____ ___  / /_  ____ _
         / / / / __ `__ \/ __ `/ __ `__ \/ __ \/ __ `/
        / /_/ / / / / / / /_/ / / / / / / /_/ / /_/ /
       / .___/_/ /_/ /_/\__,_/_/ /_/ /_/_.___/\__,_/
      /_/

conda-forge/linux-64                                        Using cache
conda-forge/noarch                                          Using cache

Transaction

  Prefix: /builds/qt/kwant-scf/micromamba/envs/pymf-docs

  Updating specs:

   - python=3.11
   - kwant
   - myst-nb
   - numpy
   - scipy
   - matplotlib-base
   - sphinx-togglebutton
   - sphinx-copybutton
   - pip
   - git
   - make


  Package                               Version  Build                    Channel           Size
──────────────────────────────────────────────────────────────────────────────────────────────────
  Install:
──────────────────────────────────────────────────────────────────────────────────────────────────

  + _libgcc_mutex                           0.1  conda_forge              conda-forge     Cached
  + _openmp_mutex                           4.5  2_gnu                    conda-forge     Cached
  + alabaster                            0.7.16  pyhd8ed1ab_0             conda-forge     Cached
  + asttokens                             2.4.1  pyhd8ed1ab_0             conda-forge     Cached
  + attrs                                23.2.0  pyh71513ae_0             conda-forge     Cached
  + babel                                2.14.0  pyhd8ed1ab_0             conda-forge     Cached
  + brotli                                1.1.0  hd590300_1               conda-forge     Cached
  + brotli-bin                            1.1.0  hd590300_1               conda-forge     Cached
  + brotli-python                         1.1.0  py311hb755f60_1          conda-forge     Cached
  + bzip2                                 1.0.8  hd590300_5               conda-forge     Cached
  + c-ares                               1.28.1  hd590300_0               conda-forge     Cached
  + ca-certificates                    2024.2.2  hbcca054_0               conda-forge     Cached
  + certifi                            2024.2.2  pyhd8ed1ab_0             conda-forge     Cached
  + charset-normalizer                    3.3.2  pyhd8ed1ab_0             conda-forge     Cached
  + click                                 8.1.7  unix_pyh707e725_0        conda-forge     Cached
  + colorama                              0.4.6  pyhd8ed1ab_0             conda-forge     Cached
  + comm                                  0.2.2  pyhd8ed1ab_0             conda-forge     Cached
  + contourpy                             1.2.1  py311h9547e67_0          conda-forge     Cached
  + cycler                               0.12.1  pyhd8ed1ab_0             conda-forge     Cached
  + debugpy                               1.8.1  py311hb755f60_0          conda-forge     Cached
  + decorator                             5.1.1  pyhd8ed1ab_0             conda-forge     Cached
  + docutils                             0.21.2  pyhd8ed1ab_0             conda-forge     Cached
  + exceptiongroup                        1.2.0  pyhd8ed1ab_2             conda-forge     Cached
  + executing                             2.0.1  pyhd8ed1ab_0             conda-forge     Cached
  + fonttools                            4.51.0  py311h459d7ec_0          conda-forge     Cached
  + freetype                             2.12.1  h267a509_2               conda-forge     Cached
  + git                                  2.45.0  pl5321hef9f9f3_1         conda-forge     Cached
  + gmp                                   6.3.0  h59595ed_1               conda-forge     Cached
  + gmpy2                                 2.1.5  py311he48d604_0          conda-forge     Cached
  + greenlet                              3.0.3  py311hb755f60_0          conda-forge     Cached
  + idna                                    3.7  pyhd8ed1ab_0             conda-forge     Cached
  + imagesize                             1.4.1  pyhd8ed1ab_0             conda-forge     Cached
  + importlib-metadata                    7.1.0  pyha770c72_0             conda-forge     Cached
  + importlib_metadata                    7.1.0  hd8ed1ab_0               conda-forge     Cached
  + importlib_resources                   6.4.0  pyhd8ed1ab_0             conda-forge     Cached
  + iniconfig                             2.0.0  pyhd8ed1ab_0             conda-forge     Cached
  + ipykernel                            6.29.3  pyhd33586a_0             conda-forge     Cached
  + ipython                              8.22.2  pyh707e725_0             conda-forge     Cached
  + jedi                                 0.19.1  pyhd8ed1ab_0             conda-forge     Cached
  + jinja2                                3.1.3  pyhd8ed1ab_0             conda-forge     Cached
  + jsonschema                           4.22.0  pyhd8ed1ab_0             conda-forge     Cached
  + jsonschema-specifications         2023.12.1  pyhd8ed1ab_0             conda-forge     Cached
  + jupyter-cache                         1.0.0  pyhd8ed1ab_0             conda-forge     Cached
  + jupyter_client                        8.6.1  pyhd8ed1ab_0             conda-forge     Cached
  + jupyter_core                          5.7.2  py311h38be061_0          conda-forge     Cached
  + keyutils                              1.6.1  h166bdaf_0               conda-forge     Cached
  + kiwisolver                            1.4.5  py311h9547e67_1          conda-forge     Cached
  + krb5                                 1.21.2  h659d440_0               conda-forge     Cached
  + kwant                                 1.4.4  nompi_py311hfed7191_102  conda-forge     Cached
  + lcms2                                  2.16  hb7c19ff_0               conda-forge     Cached
  + ld_impl_linux-64                       2.40  h55db66e_0               conda-forge     Cached
  + lerc                                  4.0.0  h27087fc_0               conda-forge     Cached
  + libblas                               3.9.0  22_linux64_openblas      conda-forge     Cached
  + libbrotlicommon                       1.1.0  hd590300_1               conda-forge     Cached
  + libbrotlidec                          1.1.0  hd590300_1               conda-forge     Cached
  + libbrotlienc                          1.1.0  hd590300_1               conda-forge     Cached
  + libcblas                              3.9.0  22_linux64_openblas      conda-forge     Cached
  + libcurl                               8.7.1  hca28451_0               conda-forge     Cached
  + libdeflate                             1.20  hd590300_0               conda-forge     Cached
  + libedit                        3.1.20191231  he28a2e2_2               conda-forge     Cached
  + libev                                  4.33  hd590300_2               conda-forge     Cached
  + libexpat                              2.6.2  h59595ed_0               conda-forge     Cached
  + libffi                                3.4.2  h7f98852_5               conda-forge     Cached
  + libgcc-ng                            13.2.0  h77fa898_6               conda-forge     Cached
  + libgfortran-ng                       13.2.0  h69a702a_6               conda-forge     Cached
  + libgfortran5                         13.2.0  h43f5ff8_6               conda-forge     Cached
  + libgomp                              13.2.0  h77fa898_6               conda-forge     Cached
  + libiconv                               1.17  hd590300_2               conda-forge     Cached
  + libjpeg-turbo                         3.0.0  hd590300_1               conda-forge     Cached
  + liblapack                             3.9.0  22_linux64_openblas      conda-forge     Cached
  + libnghttp2                           1.58.0  h47da74e_1               conda-forge     Cached
  + libnsl                                2.0.1  hd590300_0               conda-forge     Cached
  + libopenblas                          0.3.27  pthreads_h413a1c8_0      conda-forge     Cached
  + libpng                               1.6.43  h2797004_0               conda-forge     Cached
  + libscotch                             7.0.4  h91e35bf_1               conda-forge     Cached
  + libsodium                            1.0.18  h36c2ea0_1               conda-forge     Cached
  + libsqlite                            3.45.3  h2797004_0               conda-forge     Cached
  + libssh2                              1.11.0  h0841786_0               conda-forge     Cached
  + libstdcxx-ng                         13.2.0  hc0a3c3a_6               conda-forge     Cached
  + libtiff                               4.6.0  h1dd3fc0_3               conda-forge     Cached
  + libuuid                              2.38.1  h0b41bf4_0               conda-forge     Cached
  + libwebp-base                          1.4.0  hd590300_0               conda-forge     Cached
  + libxcb                                 1.15  h0b41bf4_0               conda-forge     Cached
  + libxcrypt                            4.4.36  hd590300_1               conda-forge     Cached
  + libzlib                              1.2.13  hd590300_5               conda-forge     Cached
  + make                                    4.3  hd18ef5c_1               conda-forge     Cached
  + markdown-it-py                        3.0.0  pyhd8ed1ab_0             conda-forge     Cached
  + markupsafe                            2.1.5  py311h459d7ec_0          conda-forge     Cached
  + matplotlib-base                       3.8.4  py311h54ef318_0          conda-forge     Cached
  + matplotlib-inline                     0.1.7  pyhd8ed1ab_0             conda-forge     Cached
  + mdit-py-plugins                       0.4.0  pyhd8ed1ab_0             conda-forge     Cached
  + mdurl                                 0.1.2  pyhd8ed1ab_0             conda-forge     Cached
  + metis                                 5.1.0  h59595ed_1007            conda-forge     Cached
  + mpc                                   1.3.1  hfe3b2da_0               conda-forge     Cached
  + mpfr                                  4.2.1  h9458935_1               conda-forge     Cached
  + mpmath                                1.3.0  pyhd8ed1ab_0             conda-forge     Cached
  + mumps-include                         5.6.2  ha770c72_4               conda-forge     Cached
  + mumps-seq                             5.6.2  hfef103a_4               conda-forge     Cached
  + munkres                               1.1.4  pyh9f0ad1d_0             conda-forge     Cached
  + myst-nb                               1.1.0  pyhd8ed1ab_0             conda-forge     Cached
  + myst-parser                           3.0.1  pyhd8ed1ab_0             conda-forge     Cached
  + nbclient                             0.10.0  pyhd8ed1ab_0             conda-forge     Cached
  + nbformat                             5.10.4  pyhd8ed1ab_0             conda-forge     Cached
  + ncurses                        6.4.20240210  h59595ed_0               conda-forge     Cached
  + nest-asyncio                          1.6.0  pyhd8ed1ab_0             conda-forge     Cached
  + numpy                                1.26.4  py311h64a7726_0          conda-forge     Cached
  + openjpeg                              2.5.2  h488ebb8_0               conda-forge     Cached
  + openssl                               3.3.0  hd590300_0               conda-forge     Cached
  + packaging                              24.0  pyhd8ed1ab_0             conda-forge     Cached
  + parso                                 0.8.4  pyhd8ed1ab_0             conda-forge     Cached
  + pcre2                                 10.43  hcad00b1_0               conda-forge     Cached
  + perl                                 5.32.1  7_hd590300_perl5         conda-forge     Cached
  + pexpect                               4.9.0  pyhd8ed1ab_0             conda-forge     Cached
  + pickleshare                           0.7.5  py_1003                  conda-forge     Cached
  + pillow                               10.3.0  py311h18e6fac_0          conda-forge     Cached
  + pip                                    24.0  pyhd8ed1ab_0             conda-forge     Cached
  + pkgutil-resolve-name                 1.3.10  pyhd8ed1ab_1             conda-forge     Cached
  + platformdirs                          4.2.1  pyhd8ed1ab_0             conda-forge     Cached
  + pluggy                                1.5.0  pyhd8ed1ab_0             conda-forge     Cached
  + prompt-toolkit                       3.0.42  pyha770c72_0             conda-forge     Cached
  + psutil                                5.9.8  py311h459d7ec_0          conda-forge     Cached
  + pthread-stubs                           0.4  h36c2ea0_1001            conda-forge     Cached
  + ptyprocess                            0.7.0  pyhd3deb0d_0             conda-forge     Cached
  + pure_eval                             0.2.2  pyhd8ed1ab_0             conda-forge     Cached
  + pygments                             2.18.0  pyhd8ed1ab_0             conda-forge     Cached
  + pyparsing                             3.1.2  pyhd8ed1ab_0             conda-forge     Cached
  + pysocks                               1.7.1  pyha2e5f31_6             conda-forge     Cached
  + pytest                                8.2.0  pyhd8ed1ab_0             conda-forge     Cached
  + python                               3.11.9  hb806964_0_cpython       conda-forge     Cached
  + python-dateutil                       2.9.0  pyhd8ed1ab_0             conda-forge     Cached
  + python-fastjsonschema                2.19.1  pyhd8ed1ab_0             conda-forge     Cached
  + python_abi                             3.11  4_cp311                  conda-forge     Cached
  + pytz                                 2024.1  pyhd8ed1ab_0             conda-forge     Cached
  + pyyaml                                6.0.1  py311h459d7ec_1          conda-forge     Cached
  + pyzmq                                26.0.2  py311h08a0b41_0          conda-forge     Cached
  + qsymm                                 1.4.0  pyhd8ed1ab_0             conda-forge     Cached
  + readline                                8.2  h8228510_1               conda-forge     Cached
  + referencing                          0.35.1  pyhd8ed1ab_0             conda-forge     Cached
  + requests                             2.31.0  pyhd8ed1ab_0             conda-forge     Cached
  + rpds-py                              0.18.0  py311h46250e7_0          conda-forge     Cached
  + scipy                                1.13.0  py311h517d4fd_1          conda-forge     Cached
  + scotch                                7.0.4  h23d43cc_1               conda-forge     Cached
  + setuptools                           69.5.1  pyhd8ed1ab_0             conda-forge     Cached
  + six                                  1.16.0  pyh6c4a22f_0             conda-forge     Cached
  + snowballstemmer                       2.2.0  pyhd8ed1ab_0             conda-forge     Cached
  + sphinx                                7.3.7  pyhd8ed1ab_0             conda-forge     Cached
  + sphinx-copybutton                     0.5.2  pyhd8ed1ab_0             conda-forge     Cached
  + sphinx-togglebutton                   0.3.2  pyhd8ed1ab_0             conda-forge     Cached
  + sphinxcontrib-applehelp               1.0.8  pyhd8ed1ab_0             conda-forge     Cached
  + sphinxcontrib-devhelp                 1.0.6  pyhd8ed1ab_0             conda-forge     Cached
  + sphinxcontrib-htmlhelp                2.0.5  pyhd8ed1ab_0             conda-forge     Cached
  + sphinxcontrib-jsmath                  1.0.1  pyhd8ed1ab_0             conda-forge     Cached
  + sphinxcontrib-qthelp                  1.0.7  pyhd8ed1ab_0             conda-forge     Cached
  + sphinxcontrib-serializinghtml        1.1.10  pyhd8ed1ab_0             conda-forge     Cached
  + sqlalchemy                           2.0.30  py311h331c9d8_0          conda-forge     Cached
  + stack_data                            0.6.2  pyhd8ed1ab_0             conda-forge     Cached
  + sympy                                  1.12  pypyh9d50eac_103         conda-forge     Cached
  + tabulate                              0.9.0  pyhd8ed1ab_1             conda-forge     Cached
  + tinyarray                             1.2.4  py311h320fe9a_3          conda-forge     Cached
  + tk                                   8.6.13  noxft_h4845f30_101       conda-forge     Cached
  + tomli                                 2.0.1  pyhd8ed1ab_0             conda-forge     Cached
  + tornado                                 6.4  py311h459d7ec_0          conda-forge     Cached
  + traitlets                            5.14.3  pyhd8ed1ab_0             conda-forge     Cached
  + typing-extensions                    4.11.0  hd8ed1ab_0               conda-forge     Cached
  + typing_extensions                    4.11.0  pyha770c72_0             conda-forge     Cached
  + tzdata                                2024a  h0c530f3_0               conda-forge     Cached
  + urllib3                               2.2.1  pyhd8ed1ab_0             conda-forge     Cached
  + wcwidth                              0.2.13  pyhd8ed1ab_0             conda-forge     Cached
  + wheel                                0.43.0  pyhd8ed1ab_1             conda-forge     Cached
  + xorg-libxau                          1.0.11  hd590300_0               conda-forge     Cached
  + xorg-libxdmcp                         1.1.3  h7f98852_0               conda-forge     Cached
  + xz                                    5.2.6  h166bdaf_0               conda-forge     Cached
  + yaml                                  0.2.5  h7f98852_2               conda-forge     Cached
  + zeromq                                4.3.5  h75354e8_3               conda-forge     Cached
  + zipp                                 3.17.0  pyhd8ed1ab_0             conda-forge     Cached
  + zlib                                 1.2.13  hd590300_5               conda-forge     Cached
  + zstd                                  1.5.6  ha6fb4c9_0               conda-forge     Cached

  Summary:

  Install: 177 packages

  Total download: 0 B

──────────────────────────────────────────────────────────────────────────────────────────────────



Transaction starting
Linking python_abi-3.11-4_cp311
Linking ca-certificates-2024.2.2-hbcca054_0
Linking mumps-include-5.6.2-ha770c72_4
Linking _libgcc_mutex-0.1-conda_forge
Linking libstdcxx-ng-13.2.0-hc0a3c3a_6
Linking ld_impl_linux-64-2.40-h55db66e_0
Linking libgomp-13.2.0-h77fa898_6
Linking _openmp_mutex-4.5-2_gnu
Linking libgcc-ng-13.2.0-h77fa898_6
Linking xorg-libxdmcp-1.1.3-h7f98852_0
Linking pthread-stubs-0.4-h36c2ea0_1001
Linking libsodium-1.0.18-h36c2ea0_1
Linking c-ares-1.28.1-hd590300_0
Linking libev-4.33-hd590300_2
Linking gmp-6.3.0-h59595ed_1
Linking metis-5.1.0-h59595ed_1007
Linking libwebp-base-1.4.0-hd590300_0
Linking libbrotlicommon-1.1.0-hd590300_1
Linking libiconv-1.17-hd590300_2
Linking libdeflate-1.20-hd590300_0
Linking lerc-4.0.0-h27087fc_0
Linking libjpeg-turbo-3.0.0-hd590300_1
Linking xorg-libxau-1.0.11-hd590300_0
Linking libxcrypt-4.4.36-hd590300_1
Linking libzlib-1.2.13-hd590300_5
Linking libffi-3.4.2-h7f98852_5
Linking bzip2-1.0.8-hd590300_5
Linking yaml-0.2.5-h7f98852_2
Linking libgfortran5-13.2.0-h43f5ff8_6
Linking make-4.3-hd18ef5c_1
Linking keyutils-1.6.1-h166bdaf_0
Linking openssl-3.3.0-hd590300_0
Linking ncurses-6.4.20240210-h59595ed_0
Linking libuuid-2.38.1-h0b41bf4_0
Linking libnsl-2.0.1-hd590300_0
Linking libexpat-2.6.2-h59595ed_0
Linking xz-5.2.6-h166bdaf_0
Linking mpfr-4.2.1-h9458935_1
Linking libbrotlienc-1.1.0-hd590300_1
Linking libbrotlidec-1.1.0-hd590300_1
Linking libxcb-1.15-h0b41bf4_0
Linking perl-5.32.1-7_hd590300_perl5
Linking zlib-1.2.13-hd590300_5
Linking zstd-1.5.6-ha6fb4c9_0
Linking libpng-1.6.43-h2797004_0
Linking tk-8.6.13-noxft_h4845f30_101
Linking libsqlite-3.45.3-h2797004_0
Linking pcre2-10.43-hcad00b1_0
Linking libgfortran-ng-13.2.0-h69a702a_6
Linking libnghttp2-1.58.0-h47da74e_1
Linking libssh2-1.11.0-h0841786_0
Linking libedit-3.1.20191231-he28a2e2_2
Linking readline-8.2-h8228510_1
Linking mpc-1.3.1-hfe3b2da_0
Linking brotli-bin-1.1.0-hd590300_1
Linking libtiff-4.6.0-h1dd3fc0_3
Linking freetype-2.12.1-h267a509_2
Linking libscotch-7.0.4-h91e35bf_1
Linking libopenblas-0.3.27-pthreads_h413a1c8_0
Linking krb5-1.21.2-h659d440_0
Linking brotli-1.1.0-hd590300_1
Linking openjpeg-2.5.2-h488ebb8_0
Linking lcms2-2.16-hb7c19ff_0
Linking scotch-7.0.4-h23d43cc_1
Linking libblas-3.9.0-22_linux64_openblas
Linking zeromq-4.3.5-h75354e8_3
Linking libcurl-8.7.1-hca28451_0
Linking libcblas-3.9.0-22_linux64_openblas
Linking liblapack-3.9.0-22_linux64_openblas
Linking git-2.45.0-pl5321hef9f9f3_1
Linking mumps-seq-5.6.2-hfef103a_4
Linking tzdata-2024a-h0c530f3_0
Linking python-3.11.9-hb806964_0_cpython
Linking wheel-0.43.0-pyhd8ed1ab_1
Linking setuptools-69.5.1-pyhd8ed1ab_0
Linking pip-24.0-pyhd8ed1ab_0
Linking sphinxcontrib-jsmath-1.0.1-pyhd8ed1ab_0
Linking parso-0.8.4-pyhd8ed1ab_0
Linking pkgutil-resolve-name-1.3.10-pyhd8ed1ab_1
Linking python-fastjsonschema-2.19.1-pyhd8ed1ab_0
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Linking myst-nb-1.1.0-pyhd8ed1ab_0
Linking kwant-1.4.4-nompi_py311hfed7191_102

Transaction finished

To activate this environment, use:

    micromamba activate pymf-docs

Or to execute a single command in this environment, use:

    micromamba run -n pymf-docs mycommand


Installing pip packages: sphinx-book-theme>=1.1.0, sphinx-tippy, ..
Processing /builds/qt/kwant-scf
  Installing build dependencies: started
  Installing build dependencies: finished with status 'done'
  Getting requirements to build wheel: started
  Getting requirements to build wheel: finished with status 'done'
  Preparing metadata (pyproject.toml): started
  Preparing metadata (pyproject.toml): finished with status 'done'
Collecting sphinx-book-theme>=1.1.0 (from -r /builds/qt/kwant-scf/docs/mambafBaOC0oG7TD (line 1))
  Downloading sphinx_book_theme-1.1.2-py3-none-any.whl.metadata (5.7 kB)
Collecting sphinx-tippy (from -r /builds/qt/kwant-scf/docs/mambafBaOC0oG7TD (line 2))
  Downloading sphinx_tippy-0.4.3-py3-none-any.whl.metadata (1.2 kB)
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Collecting pydata-sphinx-theme>=0.14 (from sphinx-book-theme>=1.1.0->-r /builds/qt/kwant-scf/docs/mambafBaOC0oG7TD (line 1))
  Downloading pydata_sphinx_theme-0.15.2-py3-none-any.whl.metadata (7.3 kB)
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Collecting accessible-pygments (from pydata-sphinx-theme>=0.14->sphinx-book-theme>=1.1.0->-r /builds/qt/kwant-scf/docs/mambafBaOC0oG7TD (line 1))
  Downloading accessible_pygments-0.0.4-py2.py3-none-any.whl.metadata (6.0 kB)
Requirement already satisfied: typing-extensions in /builds/qt/kwant-scf/micromamba/envs/pymf-docs/lib/python3.11/site-packages (from pydata-sphinx-theme>=0.14->sphinx-book-theme>=1.1.0->-r /builds/qt/kwant-scf/docs/mambafBaOC0oG7TD (line 1)) (4.11.0)
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Requirement already satisfied: sphinxcontrib-devhelp in /builds/qt/kwant-scf/micromamba/envs/pymf-docs/lib/python3.11/site-packages (from sphinx>=5->sphinx-book-theme>=1.1.0->-r /builds/qt/kwant-scf/docs/mambafBaOC0oG7TD (line 1)) (1.0.6)
Requirement already satisfied: sphinxcontrib-jsmath in /builds/qt/kwant-scf/micromamba/envs/pymf-docs/lib/python3.11/site-packages (from sphinx>=5->sphinx-book-theme>=1.1.0->-r /builds/qt/kwant-scf/docs/mambafBaOC0oG7TD (line 1)) (1.0.1)
Requirement already satisfied: sphinxcontrib-htmlhelp>=2.0.0 in /builds/qt/kwant-scf/micromamba/envs/pymf-docs/lib/python3.11/site-packages (from sphinx>=5->sphinx-book-theme>=1.1.0->-r /builds/qt/kwant-scf/docs/mambafBaOC0oG7TD (line 1)) (2.0.5)
Requirement already satisfied: sphinxcontrib-serializinghtml>=1.1.9 in /builds/qt/kwant-scf/micromamba/envs/pymf-docs/lib/python3.11/site-packages (from sphinx>=5->sphinx-book-theme>=1.1.0->-r /builds/qt/kwant-scf/docs/mambafBaOC0oG7TD (line 1)) (1.1.10)
Requirement already satisfied: sphinxcontrib-qthelp in /builds/qt/kwant-scf/micromamba/envs/pymf-docs/lib/python3.11/site-packages (from sphinx>=5->sphinx-book-theme>=1.1.0->-r /builds/qt/kwant-scf/docs/mambafBaOC0oG7TD (line 1)) (1.0.7)
Requirement already satisfied: snowballstemmer>=2.0 in /builds/qt/kwant-scf/micromamba/envs/pymf-docs/lib/python3.11/site-packages (from sphinx>=5->sphinx-book-theme>=1.1.0->-r /builds/qt/kwant-scf/docs/mambafBaOC0oG7TD (line 1)) (2.2.0)
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Requirement already satisfied: MarkupSafe>=2.0 in /builds/qt/kwant-scf/micromamba/envs/pymf-docs/lib/python3.11/site-packages (from jinja2->sphinx-tippy->-r /builds/qt/kwant-scf/docs/mambafBaOC0oG7TD (line 2)) (2.1.5)
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Requirement already satisfied: certifi>=2017.4.17 in /builds/qt/kwant-scf/micromamba/envs/pymf-docs/lib/python3.11/site-packages (from requests->sphinx-tippy->-r /builds/qt/kwant-scf/docs/mambafBaOC0oG7TD (line 2)) (2024.2.2)
Collecting soupsieve>1.2 (from beautifulsoup4->sphinx-tippy->-r /builds/qt/kwant-scf/docs/mambafBaOC0oG7TD (line 2))
  Downloading soupsieve-2.5-py3-none-any.whl.metadata (4.7 kB)
Downloading sphinx_book_theme-1.1.2-py3-none-any.whl (400 kB)
   ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 400.8/400.8 kB 8.2 MB/s eta 0:00:00
Downloading sphinx_tippy-0.4.3-py3-none-any.whl (10.0 kB)
Downloading pydata_sphinx_theme-0.15.2-py3-none-any.whl (4.5 MB)
   ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 4.5/4.5 MB 46.1 MB/s eta 0:00:00
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Downloading soupsieve-2.5-py3-none-any.whl (36 kB)
Downloading accessible_pygments-0.0.4-py2.py3-none-any.whl (29 kB)
Building wheels for collected packages: pymf
  Building wheel for pymf (pyproject.toml): started
  Building wheel for pymf (pyproject.toml): finished with status 'done'
  Created wheel for pymf: filename=pymf-0.1.dev59+gf750ade-py3-none-any.whl size=17188 sha256=4d15b17bb1b5943b57c20bd4b1d53bbe25704d147e282bba28d96313ec8da907
  Stored in directory: /home/mambauser/.cache/pip/wheels/5b/06/10/8869722029570f6f33627b817da751714f487bfb77cdb04f2f
Successfully built pymf
Installing collected packages: soupsieve, accessible-pygments, pymf, beautifulsoup4, sphinx-tippy, pydata-sphinx-theme, sphinx-book-theme
Successfully installed accessible-pygments-0.0.4 beautifulsoup4-4.12.3 pydata-sphinx-theme-0.15.2 pymf-0.1.dev59+gf750ade soupsieve-2.5 sphinx-book-theme-1.1.2 sphinx-tippy-0.4.3
$ eval "$(micromamba shell hook --shell bash)"
$ micromamba activate pymf-docs
$ micromamba install -c conda-forge -y mamba pip pre-commit git

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         / / / / __ `__ \/ __ `/ __ `__ \/ __ \/ __ `/
        / /_/ / / / / / / /_/ / / / / / / /_/ / /_/ /
       / .___/_/ /_/ /_/\__,_/_/ /_/ /_/_.___/\__,_/
      /_/

conda-forge/linux-64                                        Using cache
conda-forge/noarch                                          Using cache

Pinned packages:
  - python 3.11.*


Transaction

  Prefix: /builds/qt/kwant-scf/micromamba/envs/pymf-docs

  Updating specs:

   - mamba
   - pip
   - pre-commit
   - git


  Package                         Version  Build            Channel           Size
────────────────────────────────────────────────────────────────────────────────────
  Install:
────────────────────────────────────────────────────────────────────────────────────

  + archspec                        0.2.3  pyhd8ed1ab_0     conda-forge     Cached
  + boltons                        24.0.0  pyhd8ed1ab_0     conda-forge     Cached
  + cffi                           1.16.0  py311hb3a22ac_0  conda-forge     Cached
  + cfgv                            3.3.1  pyhd8ed1ab_0     conda-forge     Cached
  + conda                          24.4.0  py311h38be061_0  conda-forge     Cached
  + conda-libmamba-solver          24.1.0  pyhd8ed1ab_0     conda-forge     Cached
  + conda-package-handling          2.2.0  pyh38be061_0     conda-forge     Cached
  + conda-package-streaming         0.9.0  pyhd8ed1ab_0     conda-forge     Cached
  + distlib                         0.3.8  pyhd8ed1ab_0     conda-forge     Cached
  + distro                          1.9.0  pyhd8ed1ab_0     conda-forge     Cached
  + filelock                       3.14.0  pyhd8ed1ab_0     conda-forge     Cached
  + fmt                            10.2.1  h00ab1b0_0       conda-forge     Cached
  + icu                              73.2  h59595ed_0       conda-forge     Cached
  + identify                       2.5.36  pyhd8ed1ab_0     conda-forge     Cached
  + jsonpatch                        1.33  pyhd8ed1ab_0     conda-forge     Cached
  + jsonpointer                       2.4  py311h38be061_3  conda-forge     Cached
  + libarchive                      3.7.2  h2aa1ff5_1       conda-forge     Cached
  + libmamba                        1.5.8  had39da4_0       conda-forge     Cached
  + libmambapy                      1.5.8  py311hf2555c7_0  conda-forge     Cached
  + libsolv                        0.7.29  ha6fb4c9_0       conda-forge     Cached
  + libxml2                        2.12.6  h232c23b_2       conda-forge     Cached
  + lz4-c                           1.9.4  hcb278e6_0       conda-forge     Cached
  + lzo                              2.10  hd590300_1001    conda-forge     Cached
  + mamba                           1.5.8  py311h3072747_0  conda-forge     Cached
  + menuinst                        2.0.2  py311h38be061_0  conda-forge     Cached
  + nodeenv                         1.8.0  pyhd8ed1ab_0     conda-forge     Cached
  + pre-commit                      3.7.0  pyha770c72_0     conda-forge     Cached
  + pybind11-abi                        4  hd8ed1ab_3       conda-forge     Cached
  + pycosat                         0.6.6  py311h459d7ec_0  conda-forge     Cached
  + pycparser                        2.22  pyhd8ed1ab_0     conda-forge     Cached
  + reproc                   14.2.4.post0  hd590300_1       conda-forge     Cached
  + reproc-cpp               14.2.4.post0  h59595ed_1       conda-forge     Cached
  + ruamel.yaml                    0.18.6  py311h459d7ec_0  conda-forge     Cached
  + ruamel.yaml.clib                0.2.8  py311h459d7ec_0  conda-forge     Cached
  + tqdm                           4.66.4  pyhd8ed1ab_0     conda-forge     Cached
  + truststore                      0.8.0  pyhd8ed1ab_0     conda-forge     Cached
  + ukkonen                         1.0.1  py311h9547e67_4  conda-forge     Cached
  + virtualenv                    20.26.1  pyhd8ed1ab_0     conda-forge     Cached
  + yaml-cpp                        0.8.0  h59595ed_0       conda-forge     Cached
  + zstandard                      0.19.0  py311hd4cff14_0  conda-forge     Cached

  Summary:

  Install: 40 packages

  Total download: 0 B

────────────────────────────────────────────────────────────────────────────────────



Transaction starting
Linking fmt-10.2.1-h00ab1b0_0
Linking yaml-cpp-0.8.0-h59595ed_0
Linking reproc-14.2.4.post0-hd590300_1
Linking libsolv-0.7.29-ha6fb4c9_0
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Linking reproc-cpp-14.2.4.post0-h59595ed_1
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Linking pybind11-abi-4-hd8ed1ab_3
Linking tqdm-4.66.4-pyhd8ed1ab_0
Linking distro-1.9.0-pyhd8ed1ab_0
Linking boltons-24.0.0-pyhd8ed1ab_0
Linking pycparser-2.22-pyhd8ed1ab_0
Linking distlib-0.3.8-pyhd8ed1ab_0
Linking filelock-3.14.0-pyhd8ed1ab_0
Linking jsonpatch-1.33-pyhd8ed1ab_0
Linking virtualenv-20.26.1-pyhd8ed1ab_0
Linking libmambapy-1.5.8-py311hf2555c7_0
Linking cffi-1.16.0-py311hb3a22ac_0
Linking zstandard-0.19.0-py311hd4cff14_0
Linking ukkonen-1.0.1-py311h9547e67_4
Linking conda-package-streaming-0.9.0-pyhd8ed1ab_0
Linking identify-2.5.36-pyhd8ed1ab_0
Linking conda-package-handling-2.2.0-pyh38be061_0
Linking pre-commit-3.7.0-pyha770c72_0
Linking conda-24.4.0-py311h38be061_0
Linking conda-libmamba-solver-24.1.0-pyhd8ed1ab_0
Linking mamba-1.5.8-py311h3072747_0

Transaction finished

To activate this environment, use:

    micromamba activate pymf-docs

Or to execute a single command in this environment, use:

    micromamba run -n pymf-docs mycommand

$ git config --global --add safe.directory $CI_PROJECT_DIR
$ pre-commit run --all-files
trim trailing whitespace.................................................Passed
fix end of files.........................................................Passed
black....................................................................Passed
codespell................................................................Passed
section_end:1714998229:step_script
section_start:1714998229:archive_cache
Saving cache for successful job
Creating cache run pre-commit-non_protected...
.pre-commit-cache: found 5773 matching files and directories 
micromamba: found 89919 matching files and directories 
No URL provided, cache will not be uploaded to shared cache server. Cache will be stored only locally. 
Created cache
section_end:1714998359:archive_cache
section_start:1714998359:cleanup_file_variables
Cleaning up project directory and file based variables
section_end:1714998361:cleanup_file_variables
Job succeeded