[0KRunning with gitlab-runner 15.4.0 (43b2dc3d)[0;m [0K on universal-tn4 d3cf9985[0;m section_start:1714998064:prepare_executor [0K[0K[36;1mPreparing the "docker" executor[0;m[0;m [0KUsing Docker executor with image mambaorg/micromamba:1.4.3 ...[0;m [0KAuthenticating with credentials from /root/.docker/config.json[0;m [0KPulling docker image mambaorg/micromamba:1.4.3 ...[0;m [0KUsing docker image sha256:bcfdda4930c6becbd40d3a8eb6d835e4d2275d16767fdd5000a25507d1c56b02 for mambaorg/micromamba:1.4.3 with digest mambaorg/micromamba@sha256:25b00e28c39abc2e698943c2279fa865d0ec7c97891c7faecafb5c6417313e71 ...[0;m section_end:1714998080:prepare_executor [0Ksection_start:1714998080:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m Running on runner-d3cf9985-project-3642-concurrent-3 via tnw-tn4.tudelft.net... section_end:1714998092:prepare_script [0Ksection_start:1714998092:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m [32;1mFetching changes with git depth set to 20...[0;m Reinitialized existing Git repository in /builds/qt/kwant-scf/.git/ [32;1mChecking out f750ade0 as documentation...[0;m Removing .pre-commit-cache/ Removing micromamba/ Removing pymf/_version.py [32;1mSkipping Git submodules setup[0;m section_end:1714998111:get_sources [0Ksection_start:1714998111:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m [32;1mChecking cache for run pre-commit-non_protected...[0;m No URL provided, cache will not be downloaded from shared cache server. Instead a local version of cache will be extracted.[0;m [0;33mWARNING: micromamba/pkgs/_openmp_mutex-4.5-2_gnu/lib/libgomp.so.1: chmod micromamba/pkgs/_openmp_mutex-4.5-2_gnu/lib/libgomp.so.1: no such file or directory (suppressing repeats)[0;m [32;1mSuccessfully extracted cache[0;m section_end:1714998171:restore_cache [0Ksection_start:1714998171:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m [0KUsing docker image sha256:bcfdda4930c6becbd40d3a8eb6d835e4d2275d16767fdd5000a25507d1c56b02 for mambaorg/micromamba:1.4.3 with digest mambaorg/micromamba@sha256:25b00e28c39abc2e698943c2279fa865d0ec7c97891c7faecafb5c6417313e71 ...[0;m [32;1m$ mkdir -p micromamba[0;m [32;1m$ export MAMBA_ROOT_PREFIX=micromamba[0;m [32;1m$ micromamba create -yf docs/environment.yml[0;m __ __ ______ ___ ____ _____ ___ / /_ ____ _ / / / / __ `__ \/ __ `/ __ `__ \/ __ \/ __ `/ / /_/ / / / / / / /_/ / / / / / / /_/ / /_/ / / .___/_/ /_/ /_/\__,_/_/ /_/ /_/_.___/\__,_/ /_/ conda-forge/linux-64 Using cache conda-forge/noarch Using cache Transaction Prefix: /builds/qt/kwant-scf/micromamba/envs/pymf-docs Updating specs: - python=3.11 - kwant - myst-nb - numpy - scipy - matplotlib-base - sphinx-togglebutton - sphinx-copybutton - pip - git - make Package Version Build Channel Size ────────────────────────────────────────────────────────────────────────────────────────────────── Install: ────────────────────────────────────────────────────────────────────────────────────────────────── + _libgcc_mutex 0.1 conda_forge conda-forge Cached + _openmp_mutex 4.5 2_gnu conda-forge Cached + alabaster 0.7.16 pyhd8ed1ab_0 conda-forge Cached + asttokens 2.4.1 pyhd8ed1ab_0 conda-forge Cached + attrs 23.2.0 pyh71513ae_0 conda-forge Cached + babel 2.14.0 pyhd8ed1ab_0 conda-forge Cached + brotli 1.1.0 hd590300_1 conda-forge Cached + brotli-bin 1.1.0 hd590300_1 conda-forge Cached + brotli-python 1.1.0 py311hb755f60_1 conda-forge Cached + bzip2 1.0.8 hd590300_5 conda-forge 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conda-forge Cached + wcwidth 0.2.13 pyhd8ed1ab_0 conda-forge Cached + wheel 0.43.0 pyhd8ed1ab_1 conda-forge Cached + xorg-libxau 1.0.11 hd590300_0 conda-forge Cached + xorg-libxdmcp 1.1.3 h7f98852_0 conda-forge Cached + xz 5.2.6 h166bdaf_0 conda-forge Cached + yaml 0.2.5 h7f98852_2 conda-forge Cached + zeromq 4.3.5 h75354e8_3 conda-forge Cached + zipp 3.17.0 pyhd8ed1ab_0 conda-forge Cached + zlib 1.2.13 hd590300_5 conda-forge Cached + zstd 1.5.6 ha6fb4c9_0 conda-forge Cached Summary: Install: 177 packages Total download: 0 B ────────────────────────────────────────────────────────────────────────────────────────────────── Transaction starting Linking python_abi-3.11-4_cp311 Linking ca-certificates-2024.2.2-hbcca054_0 Linking mumps-include-5.6.2-ha770c72_4 Linking _libgcc_mutex-0.1-conda_forge Linking libstdcxx-ng-13.2.0-hc0a3c3a_6 Linking ld_impl_linux-64-2.40-h55db66e_0 Linking libgomp-13.2.0-h77fa898_6 Linking _openmp_mutex-4.5-2_gnu Linking libgcc-ng-13.2.0-h77fa898_6 Linking 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zipp-3.17.0-pyhd8ed1ab_0 Linking nest-asyncio-1.6.0-pyhd8ed1ab_0 Linking traitlets-5.14.3-pyhd8ed1ab_0 Linking exceptiongroup-1.2.0-pyhd8ed1ab_2 Linking decorator-5.1.1-pyhd8ed1ab_0 Linking tabulate-0.9.0-pyhd8ed1ab_1 Linking click-8.1.7-unix_pyh707e725_0 Linking attrs-23.2.0-pyh71513ae_0 Linking mdurl-0.1.2-pyhd8ed1ab_0 Linking typing_extensions-4.11.0-pyha770c72_0 Linking pickleshare-0.7.5-py_1003 Linking charset-normalizer-3.3.2-pyhd8ed1ab_0 Linking pysocks-1.7.1-pyha2e5f31_6 Linking idna-3.7-pyhd8ed1ab_0 Linking certifi-2024.2.2-pyhd8ed1ab_0 Linking pygments-2.18.0-pyhd8ed1ab_0 Linking alabaster-0.7.16-pyhd8ed1ab_0 Linking tomli-2.0.1-pyhd8ed1ab_0 Linking snowballstemmer-2.2.0-pyhd8ed1ab_0 Linking packaging-24.0-pyhd8ed1ab_0 Linking imagesize-1.4.1-pyhd8ed1ab_0 Linking colorama-0.4.6-pyhd8ed1ab_0 Linking docutils-0.21.2-pyhd8ed1ab_0 Linking jedi-0.19.1-pyhd8ed1ab_0 Linking pexpect-4.9.0-pyhd8ed1ab_0 Linking prompt-toolkit-3.0.42-pyha770c72_0 Linking asttokens-2.4.1-pyhd8ed1ab_0 Linking python-dateutil-2.9.0-pyhd8ed1ab_0 Linking babel-2.14.0-pyhd8ed1ab_0 Linking importlib_resources-6.4.0-pyhd8ed1ab_0 Linking importlib-metadata-7.1.0-pyha770c72_0 Linking comm-0.2.2-pyhd8ed1ab_0 Linking matplotlib-inline-0.1.7-pyhd8ed1ab_0 Linking markdown-it-py-3.0.0-pyhd8ed1ab_0 Linking typing-extensions-4.11.0-hd8ed1ab_0 Linking pytest-8.2.0-pyhd8ed1ab_0 Linking stack_data-0.6.2-pyhd8ed1ab_0 Linking importlib_metadata-7.1.0-hd8ed1ab_0 Linking mdit-py-plugins-0.4.0-pyhd8ed1ab_0 Linking ipython-8.22.2-pyh707e725_0 Linking rpds-py-0.18.0-py311h46250e7_0 Linking gmpy2-2.1.5-py311he48d604_0 Linking brotli-python-1.1.0-py311hb755f60_1 Linking tinyarray-1.2.4-py311h320fe9a_3 Linking pillow-10.3.0-py311h18e6fac_0 Linking kiwisolver-1.4.5-py311h9547e67_1 Linking greenlet-3.0.3-py311hb755f60_0 Linking debugpy-1.8.1-py311hb755f60_0 Linking tornado-6.4-py311h459d7ec_0 Linking pyzmq-26.0.2-py311h08a0b41_0 Linking psutil-5.9.8-py311h459d7ec_0 Linking markupsafe-2.1.5-py311h459d7ec_0 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jupyter-cache-1.0.0-pyhd8ed1ab_0 Linking sphinxcontrib-htmlhelp-2.0.5-pyhd8ed1ab_0 Linking sphinxcontrib-serializinghtml-1.1.10-pyhd8ed1ab_0 Linking myst-parser-3.0.1-pyhd8ed1ab_0 Linking sphinx-copybutton-0.5.2-pyhd8ed1ab_0 Linking sphinx-togglebutton-0.3.2-pyhd8ed1ab_0 Linking myst-nb-1.1.0-pyhd8ed1ab_0 Linking kwant-1.4.4-nompi_py311hfed7191_102 Transaction finished To activate this environment, use: micromamba activate pymf-docs Or to execute a single command in this environment, use: micromamba run -n pymf-docs mycommand Installing pip packages: sphinx-book-theme>=1.1.0, sphinx-tippy, .. Processing /builds/qt/kwant-scf Installing build dependencies: started Installing build dependencies: finished with status 'done' Getting requirements to build wheel: started Getting requirements to build wheel: finished with status 'done' Preparing metadata (pyproject.toml): started Preparing metadata (pyproject.toml): finished with status 'done' Collecting sphinx-book-theme>=1.1.0 (from -r /builds/qt/kwant-scf/docs/mambafBaOC0oG7TD (line 1)) Downloading sphinx_book_theme-1.1.2-py3-none-any.whl.metadata (5.7 kB) Collecting sphinx-tippy (from -r /builds/qt/kwant-scf/docs/mambafBaOC0oG7TD (line 2)) Downloading sphinx_tippy-0.4.3-py3-none-any.whl.metadata (1.2 kB) Requirement already satisfied: sphinx>=5 in /builds/qt/kwant-scf/micromamba/envs/pymf-docs/lib/python3.11/site-packages (from sphinx-book-theme>=1.1.0->-r /builds/qt/kwant-scf/docs/mambafBaOC0oG7TD (line 1)) (7.3.7) Collecting pydata-sphinx-theme>=0.14 (from sphinx-book-theme>=1.1.0->-r 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/builds/qt/kwant-scf/docs/mambafBaOC0oG7TD (line 2)) (2024.2.2) Collecting soupsieve>1.2 (from beautifulsoup4->sphinx-tippy->-r /builds/qt/kwant-scf/docs/mambafBaOC0oG7TD (line 2)) Downloading soupsieve-2.5-py3-none-any.whl.metadata (4.7 kB) Downloading sphinx_book_theme-1.1.2-py3-none-any.whl (400 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 400.8/400.8 kB 8.2 MB/s eta 0:00:00 Downloading sphinx_tippy-0.4.3-py3-none-any.whl (10.0 kB) Downloading pydata_sphinx_theme-0.15.2-py3-none-any.whl (4.5 MB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 4.5/4.5 MB 46.1 MB/s eta 0:00:00 Downloading beautifulsoup4-4.12.3-py3-none-any.whl (147 kB) ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 147.9/147.9 kB 4.6 MB/s eta 0:00:00 Downloading soupsieve-2.5-py3-none-any.whl (36 kB) Downloading accessible_pygments-0.0.4-py2.py3-none-any.whl (29 kB) Building wheels for collected packages: pymf Building wheel for pymf (pyproject.toml): started Building wheel for pymf (pyproject.toml): finished with status 'done' Created wheel for pymf: filename=pymf-0.1.dev59+gf750ade-py3-none-any.whl size=17188 sha256=4d15b17bb1b5943b57c20bd4b1d53bbe25704d147e282bba28d96313ec8da907 Stored in directory: /home/mambauser/.cache/pip/wheels/5b/06/10/8869722029570f6f33627b817da751714f487bfb77cdb04f2f Successfully built pymf Installing collected packages: soupsieve, accessible-pygments, pymf, beautifulsoup4, sphinx-tippy, pydata-sphinx-theme, sphinx-book-theme Successfully installed accessible-pygments-0.0.4 beautifulsoup4-4.12.3 pydata-sphinx-theme-0.15.2 pymf-0.1.dev59+gf750ade soupsieve-2.5 sphinx-book-theme-1.1.2 sphinx-tippy-0.4.3 [32;1m$ eval "$(micromamba shell hook --shell bash)"[0;m [32;1m$ micromamba activate pymf-docs[0;m [32;1m$ micromamba install -c conda-forge -y mamba pip pre-commit git[0;m __ __ ______ ___ ____ _____ ___ / /_ ____ _ / / / / __ `__ \/ __ `/ __ `__ \/ __ \/ __ `/ / /_/ / / / / / / /_/ / / / / / / /_/ / /_/ / / .___/_/ /_/ /_/\__,_/_/ /_/ /_/_.___/\__,_/ /_/ conda-forge/linux-64 Using cache conda-forge/noarch Using cache Pinned packages: - python 3.11.* Transaction Prefix: /builds/qt/kwant-scf/micromamba/envs/pymf-docs Updating specs: - mamba - pip - pre-commit - git Package Version Build Channel Size ──────────────────────────────────────────────────────────────────────────────────── Install: ──────────────────────────────────────────────────────────────────────────────────── + archspec 0.2.3 pyhd8ed1ab_0 conda-forge Cached + boltons 24.0.0 pyhd8ed1ab_0 conda-forge Cached + cffi 1.16.0 py311hb3a22ac_0 conda-forge Cached + cfgv 3.3.1 pyhd8ed1ab_0 conda-forge Cached + conda 24.4.0 py311h38be061_0 conda-forge Cached + conda-libmamba-solver 24.1.0 pyhd8ed1ab_0 conda-forge Cached + conda-package-handling 2.2.0 pyh38be061_0 conda-forge Cached + conda-package-streaming 0.9.0 pyhd8ed1ab_0 conda-forge Cached + distlib 0.3.8 pyhd8ed1ab_0 conda-forge Cached + distro 1.9.0 pyhd8ed1ab_0 conda-forge Cached + filelock 3.14.0 pyhd8ed1ab_0 conda-forge Cached + fmt 10.2.1 h00ab1b0_0 conda-forge Cached + icu 73.2 h59595ed_0 conda-forge Cached + identify 2.5.36 pyhd8ed1ab_0 conda-forge Cached + jsonpatch 1.33 pyhd8ed1ab_0 conda-forge Cached + jsonpointer 2.4 py311h38be061_3 conda-forge Cached + libarchive 3.7.2 h2aa1ff5_1 conda-forge Cached + libmamba 1.5.8 had39da4_0 conda-forge Cached + libmambapy 1.5.8 py311hf2555c7_0 conda-forge Cached + libsolv 0.7.29 ha6fb4c9_0 conda-forge Cached + libxml2 2.12.6 h232c23b_2 conda-forge Cached + lz4-c 1.9.4 hcb278e6_0 conda-forge Cached + lzo 2.10 hd590300_1001 conda-forge Cached + mamba 1.5.8 py311h3072747_0 conda-forge Cached + menuinst 2.0.2 py311h38be061_0 conda-forge Cached + nodeenv 1.8.0 pyhd8ed1ab_0 conda-forge Cached + pre-commit 3.7.0 pyha770c72_0 conda-forge Cached + pybind11-abi 4 hd8ed1ab_3 conda-forge Cached + pycosat 0.6.6 py311h459d7ec_0 conda-forge Cached + pycparser 2.22 pyhd8ed1ab_0 conda-forge Cached + reproc 14.2.4.post0 hd590300_1 conda-forge Cached + reproc-cpp 14.2.4.post0 h59595ed_1 conda-forge Cached + ruamel.yaml 0.18.6 py311h459d7ec_0 conda-forge Cached + ruamel.yaml.clib 0.2.8 py311h459d7ec_0 conda-forge Cached + tqdm 4.66.4 pyhd8ed1ab_0 conda-forge Cached + truststore 0.8.0 pyhd8ed1ab_0 conda-forge Cached + ukkonen 1.0.1 py311h9547e67_4 conda-forge Cached + virtualenv 20.26.1 pyhd8ed1ab_0 conda-forge Cached + yaml-cpp 0.8.0 h59595ed_0 conda-forge Cached + zstandard 0.19.0 py311hd4cff14_0 conda-forge Cached Summary: Install: 40 packages Total download: 0 B ──────────────────────────────────────────────────────────────────────────────────── Transaction starting Linking fmt-10.2.1-h00ab1b0_0 Linking yaml-cpp-0.8.0-h59595ed_0 Linking reproc-14.2.4.post0-hd590300_1 Linking libsolv-0.7.29-ha6fb4c9_0 Linking lz4-c-1.9.4-hcb278e6_0 Linking lzo-2.10-hd590300_1001 Linking icu-73.2-h59595ed_0 Linking pycosat-0.6.6-py311h459d7ec_0 Linking menuinst-2.0.2-py311h38be061_0 Linking jsonpointer-2.4-py311h38be061_3 Linking ruamel.yaml.clib-0.2.8-py311h459d7ec_0 Linking reproc-cpp-14.2.4.post0-h59595ed_1 Linking libxml2-2.12.6-h232c23b_2 Linking ruamel.yaml-0.18.6-py311h459d7ec_0 Linking libarchive-3.7.2-h2aa1ff5_1 Linking libmamba-1.5.8-had39da4_0 Linking cfgv-3.3.1-pyhd8ed1ab_0 Linking nodeenv-1.8.0-pyhd8ed1ab_0 Linking archspec-0.2.3-pyhd8ed1ab_0 Linking truststore-0.8.0-pyhd8ed1ab_0 Linking pybind11-abi-4-hd8ed1ab_3 Linking tqdm-4.66.4-pyhd8ed1ab_0 Linking distro-1.9.0-pyhd8ed1ab_0 Linking boltons-24.0.0-pyhd8ed1ab_0 Linking pycparser-2.22-pyhd8ed1ab_0 Linking distlib-0.3.8-pyhd8ed1ab_0 Linking filelock-3.14.0-pyhd8ed1ab_0 Linking jsonpatch-1.33-pyhd8ed1ab_0 Linking virtualenv-20.26.1-pyhd8ed1ab_0 Linking libmambapy-1.5.8-py311hf2555c7_0 Linking cffi-1.16.0-py311hb3a22ac_0 Linking zstandard-0.19.0-py311hd4cff14_0 Linking ukkonen-1.0.1-py311h9547e67_4 Linking conda-package-streaming-0.9.0-pyhd8ed1ab_0 Linking identify-2.5.36-pyhd8ed1ab_0 Linking conda-package-handling-2.2.0-pyh38be061_0 Linking pre-commit-3.7.0-pyha770c72_0 Linking conda-24.4.0-py311h38be061_0 Linking conda-libmamba-solver-24.1.0-pyhd8ed1ab_0 Linking mamba-1.5.8-py311h3072747_0 Transaction finished To activate this environment, use: micromamba activate pymf-docs Or to execute a single command in this environment, use: micromamba run -n pymf-docs mycommand [32;1m$ git config --global --add safe.directory $CI_PROJECT_DIR[0;m [32;1m$ pre-commit run --all-files[0;m trim trailing whitespace.................................................Passed fix end of files.........................................................Passed black....................................................................Passed codespell................................................................Passed section_end:1714998229:step_script [0Ksection_start:1714998229:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m [32;1mCreating cache run pre-commit-non_protected...[0;m .pre-commit-cache: found 5773 matching files and directories[0;m micromamba: found 89919 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Cache will be stored only locally.[0;m [32;1mCreated cache[0;m section_end:1714998359:archive_cache [0Ksection_start:1714998359:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m section_end:1714998361:cleanup_file_variables [0K[32;1mJob succeeded[0;m