topocm merge requestshttps://gitlab.kwant-project.org/qt/topocm/-/merge_requests2024-01-03T15:12:05Zhttps://gitlab.kwant-project.org/qt/topocm/-/merge_requests/57Draft: Misc edits2024-01-03T15:12:05ZAnton AkhmerovDraft: Misc editshttps://gitlab.kwant-project.org/qt/topocm/-/merge_requests/58Update w2_majorana/nanowire.md2022-08-18T12:38:22ZDaniel Alejandro Rodriguez DiazUpdate w2_majorana/nanowire.mdhttps://gitlab.kwant-project.org/qt/topocm/-/merge_requests/56filter all cell inputs (closes #234)2021-08-09T01:09:59ZAnton Akhmerovfilter all cell inputs (closes #234)https://gitlab.kwant-project.org/qt/topocm/-/merge_requests/50rewrite pumps explanation (updated)2021-08-08T23:16:51ZAnton Akhmerovrewrite pumps explanation (updated)This takes over @jaydeep.sau's changes from !40
Closes #27This takes over @jaydeep.sau's changes from !40
Closes #27https://gitlab.kwant-project.org/qt/topocm/-/merge_requests/40rewrite pumps explanation2021-08-08T23:10:37ZAnton Akhmerovrewrite pumps explanationhttps://gitlab.kwant-project.org/qt/topocm/-/merge_requests/34Fix minus sign equations for gamma, closes #1212021-08-08T20:43:06ZBas NijholtFix minus sign equations for gamma, closes #121Addresses issue [#121](https://github.com/topocm/topocm_content/issues/121).Addresses issue [#121](https://github.com/topocm/topocm_content/issues/121).https://gitlab.kwant-project.org/qt/topocm/-/merge_requests/55Switch to jupyter-book for rendering2021-08-07T00:12:21ZAnton AkhmerovSwitch to jupyter-book for renderingHere I also stop pushing updates to EDX and TUD OCW (too much work).Here I also stop pushing updates to EDX and TUD OCW (too much work).https://gitlab.kwant-project.org/qt/topocm/-/merge_requests/53switch from namespaces to dictionaries2021-08-05T21:00:36ZAnton Akhmerovswitch from namespaces to dictionariesThis aligns with Kwant's new `params` interface.This aligns with Kwant's new `params` interface.https://gitlab.kwant-project.org/qt/topocm/-/merge_requests/54switch figures to tight layout2021-07-21T22:32:12ZAnton Akhmerovswitch figures to tight layoutShould fix disappearing figure titlesShould fix disappearing figure titleshttps://gitlab.kwant-project.org/qt/topocm/-/merge_requests/52use pfaffian from pfapack2020-05-06T22:59:43ZAnton Akhmerovuse pfaffian from pfapackhttps://gitlab.kwant-project.org/qt/topocm/-/merge_requests/48WIP: Code update2020-05-06T22:25:55ZAnton AkhmerovWIP: Code updateThis MR has a dual goal:
* Updating to current holoviews to avoid a bunch of deprecation errors
* Updating to Kwant 1.4:
- Eliminating `args=[SimpleNamespace(...)]` in favor of `params={...}`.
- Using the `Builder.fill`/`Builder.subst...This MR has a dual goal:
* Updating to current holoviews to avoid a bunch of deprecation errors
* Updating to Kwant 1.4:
- Eliminating `args=[SimpleNamespace(...)]` in favor of `params={...}`.
- Using the `Builder.fill`/`Builder.substituted` pattern when defining systems.
For now we do not intend to use discretizer yet.https://gitlab.kwant-project.org/qt/topocm/-/merge_requests/51New versions2020-05-06T21:42:57ZBas NijholtNew versionsWith these changes, the notebooks work with all the latest versions of our dependencies.
## To fix
- [x] w11_extensions2/floquet.md, `holoviews.Surface` doesn't respect `extends`
- [x] `holoviews.Surface` doesn't respect `extends`...With these changes, the notebooks work with all the latest versions of our dependencies.
## To fix
- [x] w11_extensions2/floquet.md, `holoviews.Surface` doesn't respect `extends`
- [x] `holoviews.Surface` doesn't respect `extends` inside `spectrum`
- [x] `ylims` are ignored in `hv.Path` in `spectrum`, happens in `w7_defects/crystalline_defects`
- [x] use `params` to remove the 100s of warnings in each notebook about deprecated `args`
- [x] input select with HoloMaps don't work
- [x] fix warning at https://test.topocondmat.org/w3_pump_QHE/QHEedgestates.html#Quantization-of-Hall-Conductance-from-edge-states
- [x] armchair and zigzag are the same at https://test.topocondmat.org/w4_haldane/haldane_model.html#Second-try
- [x] usage of `args` at https://test.topocondmat.org/w4_haldane/haldane_model.html#Gap-closings-are-sources-of-Berry-curvature
- [x] limits of plot at https://test.topocondmat.org/w1_topointro/0d.html#The-Pfaffian-invariant
- [x] options the same at https://test.topocondmat.org/w1_topointro/1D.html
- [ ] latex labels don't rerender on replotting
- [x] WARNING:param.Trisurface: Please use TriSurface element instead at https://test.topocondmat.org/w6_3dti/3dti_signatures.html#Hexagonal-warping
- [x] extraneous outputs all over https://test.topocondmat.org/w9_disorder/topoflow.html#The-simpler-effect-of-disorder (<matplotlib.collections.LineCollection at 0x7f9ae6d351d0>)https://gitlab.kwant-project.org/qt/topocm/-/merge_requests/49increase the pelican website artifact lifetime2020-01-23T13:33:40ZBas Nijholtincrease the pelican website artifact lifetimeDima has asked me if a "self-contained" version of the site is available.Dima has asked me if a "self-contained" version of the site is available.https://gitlab.kwant-project.org/qt/topocm/-/merge_requests/46an introduction of band structures2019-01-31T20:41:42ZAnton Akhmerovan introduction of band structurescloses #213closes #213https://gitlab.kwant-project.org/qt/topocm/-/merge_requests/47fix #227 by preventing list rendering2019-01-21T22:18:26ZAnton Akhmerovfix #227 by preventing list renderinghttps://gitlab.kwant-project.org/qt/topocm/-/merge_requests/45Data simplification2019-01-02T01:25:59ZAnton AkhmerovData simplificationFurther simplification of the data structures to make the codebase easier to maintain and migrate.Further simplification of the data structures to make the codebase easier to maintain and migrate.https://gitlab.kwant-project.org/qt/topocm/-/merge_requests/44Migrate xml component generation to source2018-08-03T16:02:14ZAnton AkhmerovMigrate xml component generation to sourceThis avoids introducing an intermediate format for data, reduces the
amount of code duplication, and simplifies the converter.
For simplicity, and in view of upcoming changes this also removes the
peer assessment.This avoids introducing an intermediate format for data, reduces the
amount of code duplication, and simplifies the converter.
For simplicity, and in view of upcoming changes this also removes the
peer assessment.https://gitlab.kwant-project.org/qt/topocm/-/merge_requests/43convert notebooks to markdown2018-08-02T08:06:45ZAnton Akhmerovconvert notebooks to markdownCloses issue #212Closes issue #212https://gitlab.kwant-project.org/qt/topocm/-/merge_requests/42change the seed of spectrum plot and change confusing start of sentence2018-02-02T13:57:33ZBas Nijholtchange the seed of spectrum plot and change confusing start of sentencehttps://gitlab.kwant-project.org/qt/topocm/-/merge_requests/41Pretty fmt2018-01-31T21:02:59ZAnton AkhmerovPretty fmtMinor simplificationMinor simplification