set conda environment and package folder from inside startup.sh script

Dockerfile

@@ -107,10 +107,6 @@ RUN fix-permissions /opt/conda
 # Cleanup all downloaded conda files
 RUN conda clean --yes --all
 
-# Set the conda environment folder in the home folder
-RUN conda config --system --add envs_dirs /home/tinkerer/.conda/envs
-RUN conda config --system --add pkgs_dirs /home/tinkerer/.conda/pkgs
-
 # copy startup.sh script and set start-up command
 COPY startup.sh /usr/local/bin
 CMD ["startup.sh"]

startup.sh

@@ -8,6 +8,10 @@
 chown $NB_UID:$NB_GID /home/$NB_USER
 cd /home/$NB_USER  # make sure that we're in the right place
 
+# Set the conda environment and package folder in the home folder
+conda config --system --add envs_dirs /home/$NB_USER/.conda/envs
+conda config --system --add pkgs_dirs /home/$NB_USER/.conda/pkgs
+
 ## launch daemonized SSHD
 mkdir -p /var/run/sshd
 /usr/sbin/sshd