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build:latest

Passed Started by
Rafal Skolasinski
@r-j-skolasinski
1Running with gitlab-runner 11.2.0 (35e8515d)
2 on universal-tn4 d3cf9985
3Using Docker executor with image gitlab.kwant-project.org:5005/kwant/testing ...
4Pulling docker image gitlab.kwant-project.org:5005/kwant/testing ...
5Using docker image sha256:641f16737f3a49ac307b7d9f50da160f4d74ae0e76f0460d5d793dbc0060e0f9 for gitlab.kwant-project.org:5005/kwant/testing ...
6 Running on runner-d3cf9985-project-134-concurrent-4 via tnw-tn4.tudelft.net... 00:03
7 Cloning repository... 00:03
8Cloning into '/builds/r-j-skolasinski/kwant'...
9Checking out 71cad3a0 as stable...
10Skipping Git submodules setup
11 $ source deactivate 01:30
12$ source activate kwant-latest
13$ unset CFLAGS
14$ echo -e "[DEFAULT]\ndefine_macros = CYTHON_TRACE=1" >build.conf
15$ ./setup.py build
16kwant/graph/slicer.pyx: cannot find cimported module '.'
17kwant/linalg/lapack.pyx: cannot find cimported module '.'
18kwant/linalg/_mumps.pyx: cannot find cimported module '.'
19Compiling kwant/_system.pyx because it changed.
20Compiling kwant/operator.pyx because it changed.
21Compiling kwant/graph/core.pyx because it changed.
22Compiling kwant/graph/utils.pyx because it changed.
23Compiling kwant/graph/slicer.pyx because it changed.
24Compiling kwant/linalg/lapack.pyx because it changed.
25Compiling kwant/linalg/_mumps.pyx because it changed.
26[1/7] Cythonizing kwant/_system.pyx
27[2/7] Cythonizing kwant/graph/core.pyx
28[3/7] Cythonizing kwant/graph/slicer.pyx
29[4/7] Cythonizing kwant/graph/utils.pyx
30[5/7] Cythonizing kwant/linalg/_mumps.pyx
31[6/7] Cythonizing kwant/linalg/lapack.pyx
32[7/7] Cythonizing kwant/operator.pyx
33running build
34running build_py
35creating build
36creating build/lib.linux-x86_64-3.6
37creating build/lib.linux-x86_64-3.6/kwant
38copying kwant/wraparound.py -> build/lib.linux-x86_64-3.6/kwant
39copying kwant/_common.py -> build/lib.linux-x86_64-3.6/kwant
40copying kwant/system.py -> build/lib.linux-x86_64-3.6/kwant
41copying kwant/lattice.py -> build/lib.linux-x86_64-3.6/kwant
42copying kwant/_kwant_version.py -> build/lib.linux-x86_64-3.6/kwant
43copying kwant/__init__.py -> build/lib.linux-x86_64-3.6/kwant
44copying kwant/_colormaps.py -> build/lib.linux-x86_64-3.6/kwant
45copying kwant/plotter.py -> build/lib.linux-x86_64-3.6/kwant
46copying kwant/digest.py -> build/lib.linux-x86_64-3.6/kwant
47copying kwant/rmt.py -> build/lib.linux-x86_64-3.6/kwant
48copying kwant/builder.py -> build/lib.linux-x86_64-3.6/kwant
49copying kwant/kpm.py -> build/lib.linux-x86_64-3.6/kwant
50copying kwant/version.py -> build/lib.linux-x86_64-3.6/kwant
51creating build/lib.linux-x86_64-3.6/kwant/graph
52copying kwant/graph/defs.py -> build/lib.linux-x86_64-3.6/kwant/graph
53copying kwant/graph/__init__.py -> build/lib.linux-x86_64-3.6/kwant/graph
54copying kwant/graph/dissection.py -> build/lib.linux-x86_64-3.6/kwant/graph
55creating build/lib.linux-x86_64-3.6/kwant/linalg
56copying kwant/linalg/fortran_helpers.py -> build/lib.linux-x86_64-3.6/kwant/linalg
57copying kwant/linalg/lll.py -> build/lib.linux-x86_64-3.6/kwant/linalg
58copying kwant/linalg/f_lapack.py -> build/lib.linux-x86_64-3.6/kwant/linalg
59copying kwant/linalg/decomp_lu.py -> build/lib.linux-x86_64-3.6/kwant/linalg
60copying kwant/linalg/__init__.py -> build/lib.linux-x86_64-3.6/kwant/linalg
61copying kwant/linalg/decomp_ev.py -> build/lib.linux-x86_64-3.6/kwant/linalg
62copying kwant/linalg/mumps.py -> build/lib.linux-x86_64-3.6/kwant/linalg
63copying kwant/linalg/cmumps.py -> build/lib.linux-x86_64-3.6/kwant/linalg
64copying kwant/linalg/decomp_schur.py -> build/lib.linux-x86_64-3.6/kwant/linalg
65creating build/lib.linux-x86_64-3.6/kwant/physics
66copying kwant/physics/dispersion.py -> build/lib.linux-x86_64-3.6/kwant/physics
67copying kwant/physics/__init__.py -> build/lib.linux-x86_64-3.6/kwant/physics
68copying kwant/physics/symmetry.py -> build/lib.linux-x86_64-3.6/kwant/physics
69copying kwant/physics/leads.py -> build/lib.linux-x86_64-3.6/kwant/physics
70copying kwant/physics/noise.py -> build/lib.linux-x86_64-3.6/kwant/physics
71creating build/lib.linux-x86_64-3.6/kwant/tests
72copying kwant/tests/test_comprehensive.py -> build/lib.linux-x86_64-3.6/kwant/tests
73copying kwant/tests/test_kpm.py -> build/lib.linux-x86_64-3.6/kwant/tests
74copying kwant/tests/test_rmt.py -> build/lib.linux-x86_64-3.6/kwant/tests
75copying kwant/tests/test_wraparound.py -> build/lib.linux-x86_64-3.6/kwant/tests
76copying kwant/tests/__init__.py -> build/lib.linux-x86_64-3.6/kwant/tests
77copying kwant/tests/test_builder.py -> build/lib.linux-x86_64-3.6/kwant/tests
78copying kwant/tests/test_operator.py -> build/lib.linux-x86_64-3.6/kwant/tests
79copying kwant/tests/test_system.py -> build/lib.linux-x86_64-3.6/kwant/tests
80copying kwant/tests/test_lattice.py -> build/lib.linux-x86_64-3.6/kwant/tests
81copying kwant/tests/test_plotter.py -> build/lib.linux-x86_64-3.6/kwant/tests
82creating build/lib.linux-x86_64-3.6/kwant/solvers
83copying kwant/solvers/sparse.py -> build/lib.linux-x86_64-3.6/kwant/solvers
84copying kwant/solvers/common.py -> build/lib.linux-x86_64-3.6/kwant/solvers
85copying kwant/solvers/__init__.py -> build/lib.linux-x86_64-3.6/kwant/solvers
86copying kwant/solvers/mumps.py -> build/lib.linux-x86_64-3.6/kwant/solvers
87copying kwant/solvers/default.py -> build/lib.linux-x86_64-3.6/kwant/solvers
88creating build/lib.linux-x86_64-3.6/kwant/continuum
89copying kwant/continuum/discretizer.py -> build/lib.linux-x86_64-3.6/kwant/continuum
90copying kwant/continuum/_common.py -> build/lib.linux-x86_64-3.6/kwant/continuum
91copying kwant/continuum/__init__.py -> build/lib.linux-x86_64-3.6/kwant/continuum
92creating build/lib.linux-x86_64-3.6/kwant/graph/tests
93copying kwant/graph/tests/test_scotch.py -> build/lib.linux-x86_64-3.6/kwant/graph/tests
94copying kwant/graph/tests/test_utils.py -> build/lib.linux-x86_64-3.6/kwant/graph/tests
95copying kwant/graph/tests/test_core.py -> build/lib.linux-x86_64-3.6/kwant/graph/tests
96copying kwant/graph/tests/__init__.py -> build/lib.linux-x86_64-3.6/kwant/graph/tests
97copying kwant/graph/tests/test_slicer.py -> build/lib.linux-x86_64-3.6/kwant/graph/tests
98copying kwant/graph/tests/test_dissection.py -> build/lib.linux-x86_64-3.6/kwant/graph/tests
99creating build/lib.linux-x86_64-3.6/kwant/linalg/tests
100copying kwant/linalg/tests/test_mumps.py -> build/lib.linux-x86_64-3.6/kwant/linalg/tests
101copying kwant/linalg/tests/__init__.py -> build/lib.linux-x86_64-3.6/kwant/linalg/tests
102copying kwant/linalg/tests/test_linalg.py -> build/lib.linux-x86_64-3.6/kwant/linalg/tests
103copying kwant/linalg/tests/_test_utils.py -> build/lib.linux-x86_64-3.6/kwant/linalg/tests
104copying kwant/linalg/tests/test_lll.py -> build/lib.linux-x86_64-3.6/kwant/linalg/tests
105creating build/lib.linux-x86_64-3.6/kwant/physics/tests
106copying kwant/physics/tests/__init__.py -> build/lib.linux-x86_64-3.6/kwant/physics/tests
107copying kwant/physics/tests/test_symmetry.py -> build/lib.linux-x86_64-3.6/kwant/physics/tests
108copying kwant/physics/tests/test_leads.py -> build/lib.linux-x86_64-3.6/kwant/physics/tests
109copying kwant/physics/tests/test_dispersion.py -> build/lib.linux-x86_64-3.6/kwant/physics/tests
110copying kwant/physics/tests/test_noise.py -> build/lib.linux-x86_64-3.6/kwant/physics/tests
111creating build/lib.linux-x86_64-3.6/kwant/solvers/tests
112copying kwant/solvers/tests/test_mumps.py -> build/lib.linux-x86_64-3.6/kwant/solvers/tests
113copying kwant/solvers/tests/__init__.py -> build/lib.linux-x86_64-3.6/kwant/solvers/tests
114copying kwant/solvers/tests/test_sparse.py -> build/lib.linux-x86_64-3.6/kwant/solvers/tests
115copying kwant/solvers/tests/_test_sparse.py -> build/lib.linux-x86_64-3.6/kwant/solvers/tests
116creating build/lib.linux-x86_64-3.6/kwant/continuum/tests
117copying kwant/continuum/tests/__init__.py -> build/lib.linux-x86_64-3.6/kwant/continuum/tests
118copying kwant/continuum/tests/test_discretizer.py -> build/lib.linux-x86_64-3.6/kwant/continuum/tests
119copying kwant/continuum/tests/test_common.py -> build/lib.linux-x86_64-3.6/kwant/continuum/tests
120running build_ext
121building 'kwant._system' extension
122creating build/temp.linux-x86_64-3.6
123creating build/temp.linux-x86_64-3.6/kwant
124gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -m64 -fPIC -m64 -fPIC -I/include -fPIC -DCYTHON_TRACE=1 -I./kwant/graph -Ikwant/graph -I/usr/local/envs/kwant-latest/lib/python3.6/site-packages/numpy/core/include -I/usr/local/envs/kwant-latest/include/python3.6m -c kwant/_system.c -o build/temp.linux-x86_64-3.6/kwant/_system.o
125In file included from /usr/local/envs/kwant-latest/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1821:0,
126 from /usr/local/envs/kwant-latest/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:18,
127 from /usr/local/envs/kwant-latest/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4,
128 from kwant/_system.c:639:
129/usr/local/envs/kwant-latest/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
130 #warning "Using deprecated NumPy API, disable it by " \
131 ^
132kwant/_system.c: In function ‘__pyx_memoryview_is_slice’:
133kwant/_system.c:1685:53: warning: ‘__pyx_tstate’ may be used uninitialized in this function [-Wmaybe-uninitialized]
134 #define __Pyx_PyThreadState_declare PyThreadState *__pyx_tstate;
135 ^
136kwant/_system.c:1685:53: note: ‘__pyx_tstate’ was declared here
137 #define __Pyx_PyThreadState_declare PyThreadState *__pyx_tstate;
138 ^
139kwant/_system.c:18846:7: note: in expansion of macro ‘__Pyx_PyThreadState_declare’
140 __Pyx_PyThreadState_declare
141 ^
142kwant/_system.c: In function ‘__pyx_memoryview_convert_item_to_object’:
143kwant/_system.c:31676:17: warning: ‘__pyx_tstate’ may be used uninitialized in this function [-Wmaybe-uninitialized]
144 *tb = tstate->curexc_traceback;
145 ^
146kwant/_system.c:1685:53: note: ‘__pyx_tstate’ was declared here
147 #define __Pyx_PyThreadState_declare PyThreadState *__pyx_tstate;
148 ^
149kwant/_system.c:19539:5: note: in expansion of macro ‘__Pyx_PyThreadState_declare’
150 __Pyx_PyThreadState_declare
151 ^
152gcc -pthread -shared -L/usr/local/envs/kwant-latest/lib -Wl,-rpath=/usr/local/envs/kwant-latest/lib,--no-as-needed -L/usr/local/envs/kwant-latest/lib -Wl,-rpath=/usr/local/envs/kwant-latest/lib,--no-as-needed -Wl,-rpath,/lib -L/lib -I/include build/temp.linux-x86_64-3.6/kwant/_system.o -L/usr/local/envs/kwant-latest/lib -lpython3.6m -o build/lib.linux-x86_64-3.6/kwant/_system.cpython-36m-x86_64-linux-gnu.so
153building 'kwant.operator' extension
154gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -m64 -fPIC -m64 -fPIC -I/include -fPIC -DCYTHON_TRACE=1 -I./kwant/graph -Ikwant/graph -I/usr/local/envs/kwant-latest/lib/python3.6/site-packages/numpy/core/include -I/usr/local/envs/kwant-latest/include/python3.6m -c kwant/operator.c -o build/temp.linux-x86_64-3.6/kwant/operator.o
155In file included from /usr/local/envs/kwant-latest/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1821:0,
156 from /usr/local/envs/kwant-latest/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:18,
157 from /usr/local/envs/kwant-latest/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4,
158 from kwant/operator.c:640:
159/usr/local/envs/kwant-latest/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
160 #warning "Using deprecated NumPy API, disable it by " \
161 ^
162kwant/operator.c: In function ‘__pyx_memoryview_is_slice’:
163kwant/operator.c:1981:53: warning: ‘__pyx_tstate’ may be used uninitialized in this function [-Wmaybe-uninitialized]
164 #define __Pyx_PyThreadState_declare PyThreadState *__pyx_tstate;
165 ^
166kwant/operator.c:1981:53: note: ‘__pyx_tstate’ was declared here
167 #define __Pyx_PyThreadState_declare PyThreadState *__pyx_tstate;
168 ^
169kwant/operator.c:32486:7: note: in expansion of macro ‘__Pyx_PyThreadState_declare’
170 __Pyx_PyThreadState_declare
171 ^
172kwant/operator.c: In function ‘__pyx_memoryview_convert_item_to_object’:
173kwant/operator.c:47486:17: warning: ‘__pyx_tstate’ may be used uninitialized in this function [-Wmaybe-uninitialized]
174 *tb = tstate->curexc_traceback;
175 ^
176kwant/operator.c:1981:53: note: ‘__pyx_tstate’ was declared here
177 #define __Pyx_PyThreadState_declare PyThreadState *__pyx_tstate;
178 ^
179kwant/operator.c:33179:5: note: in expansion of macro ‘__Pyx_PyThreadState_declare’
180 __Pyx_PyThreadState_declare
181 ^
182kwant/operator.c: In function ‘__pyx_pf_5kwant_8operator_8_normalize_onsite.isra.79’:
183kwant/operator.c:1981:53: warning: ‘__pyx_tstate’ may be used uninitialized in this function [-Wmaybe-uninitialized]
184 #define __Pyx_PyThreadState_declare PyThreadState *__pyx_tstate;
185 ^
186kwant/operator.c:1981:53: note: ‘__pyx_tstate’ was declared here
187 #define __Pyx_PyThreadState_declare PyThreadState *__pyx_tstate;
188 ^
189kwant/operator.c:9515:7: note: in expansion of macro ‘__Pyx_PyThreadState_declare’
190 __Pyx_PyThreadState_declare
191 ^
192kwant/operator.c: In function ‘__pyx_pw_5kwant_8operator_5_normalize_site_where’:
193kwant/operator.c:1981:53: warning: ‘__pyx_tstate’ may be used uninitialized in this function [-Wmaybe-uninitialized]
194 #define __Pyx_PyThreadState_declare PyThreadState *__pyx_tstate;
195 ^
196kwant/operator.c:1981:53: note: ‘__pyx_tstate’ was declared here
197 #define __Pyx_PyThreadState_declare PyThreadState *__pyx_tstate;
198 ^
199kwant/operator.c:6565:7: note: in expansion of macro ‘__Pyx_PyThreadState_declare’
200 __Pyx_PyThreadState_declare
201 ^
202gcc -pthread -shared -L/usr/local/envs/kwant-latest/lib -Wl,-rpath=/usr/local/envs/kwant-latest/lib,--no-as-needed -L/usr/local/envs/kwant-latest/lib -Wl,-rpath=/usr/local/envs/kwant-latest/lib,--no-as-needed -Wl,-rpath,/lib -L/lib -I/include build/temp.linux-x86_64-3.6/kwant/operator.o -L/usr/local/envs/kwant-latest/lib -lpython3.6m -o build/lib.linux-x86_64-3.6/kwant/operator.cpython-36m-x86_64-linux-gnu.so
203building 'kwant.graph.core' extension
204creating build/temp.linux-x86_64-3.6/kwant/graph
205gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -m64 -fPIC -m64 -fPIC -I/include -fPIC -DCYTHON_TRACE=1 -I./kwant/graph -I/usr/local/envs/kwant-latest/lib/python3.6/site-packages/numpy/core/include -I/usr/local/envs/kwant-latest/include/python3.6m -c kwant/graph/core.c -o build/temp.linux-x86_64-3.6/kwant/graph/core.o
206In file included from /usr/local/envs/kwant-latest/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1821:0,
207 from /usr/local/envs/kwant-latest/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:18,
208 from /usr/local/envs/kwant-latest/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4,
209 from kwant/graph/core.c:640:
210/usr/local/envs/kwant-latest/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
211 #warning "Using deprecated NumPy API, disable it by " \
212 ^
213gcc -pthread -shared -L/usr/local/envs/kwant-latest/lib -Wl,-rpath=/usr/local/envs/kwant-latest/lib,--no-as-needed -L/usr/local/envs/kwant-latest/lib -Wl,-rpath=/usr/local/envs/kwant-latest/lib,--no-as-needed -Wl,-rpath,/lib -L/lib -I/include build/temp.linux-x86_64-3.6/kwant/graph/core.o -L/usr/local/envs/kwant-latest/lib -lpython3.6m -o build/lib.linux-x86_64-3.6/kwant/graph/core.cpython-36m-x86_64-linux-gnu.so
214building 'kwant.graph.utils' extension
215gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -m64 -fPIC -m64 -fPIC -I/include -fPIC -DCYTHON_TRACE=1 -I./kwant/graph -I/usr/local/envs/kwant-latest/lib/python3.6/site-packages/numpy/core/include -I/usr/local/envs/kwant-latest/include/python3.6m -c kwant/graph/utils.c -o build/temp.linux-x86_64-3.6/kwant/graph/utils.o
216In file included from /usr/local/envs/kwant-latest/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1821:0,
217 from /usr/local/envs/kwant-latest/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:18,
218 from /usr/local/envs/kwant-latest/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4,
219 from kwant/graph/utils.c:640:
220/usr/local/envs/kwant-latest/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
221 #warning "Using deprecated NumPy API, disable it by " \
222 ^
223gcc -pthread -shared -L/usr/local/envs/kwant-latest/lib -Wl,-rpath=/usr/local/envs/kwant-latest/lib,--no-as-needed -L/usr/local/envs/kwant-latest/lib -Wl,-rpath=/usr/local/envs/kwant-latest/lib,--no-as-needed -Wl,-rpath,/lib -L/lib -I/include build/temp.linux-x86_64-3.6/kwant/graph/utils.o -L/usr/local/envs/kwant-latest/lib -lpython3.6m -o build/lib.linux-x86_64-3.6/kwant/graph/utils.cpython-36m-x86_64-linux-gnu.so
224building 'kwant.graph.slicer' extension
225creating build/temp.linux-x86_64-3.6/kwant/graph/c_slicer
226gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -m64 -fPIC -m64 -fPIC -I/include -fPIC -DCYTHON_TRACE=1 -I./kwant/graph -I/usr/local/envs/kwant-latest/lib/python3.6/site-packages/numpy/core/include -I/usr/local/envs/kwant-latest/include/python3.6m -c kwant/graph/slicer.c -o build/temp.linux-x86_64-3.6/kwant/graph/slicer.o
227In file included from /usr/local/envs/kwant-latest/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1821:0,
228 from /usr/local/envs/kwant-latest/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:18,
229 from /usr/local/envs/kwant-latest/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4,
230 from kwant/graph/slicer.c:647:
231/usr/local/envs/kwant-latest/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
232 #warning "Using deprecated NumPy API, disable it by " \
233 ^
234gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -m64 -fPIC -m64 -fPIC -I/include -fPIC -DCYTHON_TRACE=1 -I./kwant/graph -I/usr/local/envs/kwant-latest/lib/python3.6/site-packages/numpy/core/include -I/usr/local/envs/kwant-latest/include/python3.6m -c kwant/graph/c_slicer/partitioner.cc -o build/temp.linux-x86_64-3.6/kwant/graph/c_slicer/partitioner.o
235kwant/graph/c_slicer/partitioner.cc: In member function ‘void Partitioner::bisectFirst(std::vector<int>&, std::vector<int>&, double, int, int)’:
236kwant/graph/c_slicer/partitioner.cc:98:9: warning: ‘left_border_vertex’ may be used uninitialized in this function [-Wmaybe-uninitialized]
237 int left_border_vertex, right_border_vertex;
238 ^
239gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -m64 -fPIC -m64 -fPIC -I/include -fPIC -DCYTHON_TRACE=1 -I./kwant/graph -I/usr/local/envs/kwant-latest/lib/python3.6/site-packages/numpy/core/include -I/usr/local/envs/kwant-latest/include/python3.6m -c kwant/graph/c_slicer/slicer.cc -o build/temp.linux-x86_64-3.6/kwant/graph/c_slicer/slicer.o
240g++ -pthread -shared -L/usr/local/envs/kwant-latest/lib -Wl,-rpath=/usr/local/envs/kwant-latest/lib,--no-as-needed -L/usr/local/envs/kwant-latest/lib -Wl,-rpath=/usr/local/envs/kwant-latest/lib,--no-as-needed -Wl,-rpath,/lib -L/lib -I/include build/temp.linux-x86_64-3.6/kwant/graph/slicer.o build/temp.linux-x86_64-3.6/kwant/graph/c_slicer/partitioner.o build/temp.linux-x86_64-3.6/kwant/graph/c_slicer/slicer.o -L/usr/local/envs/kwant-latest/lib -lpython3.6m -o build/lib.linux-x86_64-3.6/kwant/graph/slicer.cpython-36m-x86_64-linux-gnu.so
241building 'kwant.linalg.lapack' extension
242creating build/temp.linux-x86_64-3.6/kwant/linalg
243gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -m64 -fPIC -m64 -fPIC -I/include -fPIC -DCYTHON_TRACE=1 -I/usr/local/envs/kwant-latest/lib/python3.6/site-packages/numpy/core/include -I/usr/local/envs/kwant-latest/include/python3.6m -c kwant/linalg/lapack.c -o build/temp.linux-x86_64-3.6/kwant/linalg/lapack.o
244In file included from /usr/local/envs/kwant-latest/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1821:0,
245 from /usr/local/envs/kwant-latest/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:18,
246 from /usr/local/envs/kwant-latest/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4,
247 from kwant/linalg/lapack.c:641:
248/usr/local/envs/kwant-latest/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
249 #warning "Using deprecated NumPy API, disable it by " \
250 ^
251gcc -pthread -shared -L/usr/local/envs/kwant-latest/lib -Wl,-rpath=/usr/local/envs/kwant-latest/lib,--no-as-needed -L/usr/local/envs/kwant-latest/lib -Wl,-rpath=/usr/local/envs/kwant-latest/lib,--no-as-needed -Wl,-rpath,/lib -L/lib -I/include build/temp.linux-x86_64-3.6/kwant/linalg/lapack.o -L/usr/local/envs/kwant-latest/lib -lblas -llapack -lpython3.6m -o build/lib.linux-x86_64-3.6/kwant/linalg/lapack.cpython-36m-x86_64-linux-gnu.so
252building 'kwant.linalg._mumps' extension
253gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -m64 -fPIC -m64 -fPIC -I/include -fPIC -DCYTHON_TRACE=1 -DCYTHON_TRACE=1 -I/usr/local/envs/kwant-latest/lib/python3.6/site-packages/numpy/core/include -I/usr/local/envs/kwant-latest/lib/python3.6/site-packages/numpy/core/include -I/usr/local/envs/kwant-latest/include/python3.6m -c kwant/linalg/_mumps.c -o build/temp.linux-x86_64-3.6/kwant/linalg/_mumps.o
254In file included from /usr/local/envs/kwant-latest/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1821:0,
255 from /usr/local/envs/kwant-latest/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:18,
256 from /usr/local/envs/kwant-latest/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4,
257 from kwant/linalg/_mumps.c:655:
258/usr/local/envs/kwant-latest/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
259 #warning "Using deprecated NumPy API, disable it by " \
260 ^
261kwant/linalg/_mumps.c:2981:18: warning: ‘__pyx_f_5kwant_6linalg_6_mumps_make_smumps_real_array’ defined but not used [-Wunused-function]
262 static PyObject *__pyx_f_5kwant_6linalg_6_mumps_make_smumps_real_array(SMUMPS_REAL *__pyx_v_array) {
263 ^
264kwant/linalg/_mumps.c:3367:18: warning: ‘__pyx_f_5kwant_6linalg_6_mumps_make_dmumps_real_array’ defined but not used [-Wunused-function]
265 static PyObject *__pyx_f_5kwant_6linalg_6_mumps_make_dmumps_real_array(DMUMPS_REAL *__pyx_v_array) {
266 ^
267kwant/linalg/_mumps.c:3753:18: warning: ‘__pyx_f_5kwant_6linalg_6_mumps_make_cmumps_real_array’ defined but not used [-Wunused-function]
268 static PyObject *__pyx_f_5kwant_6linalg_6_mumps_make_cmumps_real_array(CMUMPS_REAL *__pyx_v_array) {
269 ^
270gcc -pthread -shared -L/usr/local/envs/kwant-latest/lib -Wl,-rpath=/usr/local/envs/kwant-latest/lib,--no-as-needed -L/usr/local/envs/kwant-latest/lib -Wl,-rpath=/usr/local/envs/kwant-latest/lib,--no-as-needed -Wl,-rpath,/lib -L/lib -I/include build/temp.linux-x86_64-3.6/kwant/linalg/_mumps.o -L/usr/local/envs/kwant-latest/lib -lzmumps -lmumps_common -lmetis -lesmumps -lscotch -lscotcherr -lmpiseq -lpord -lgfortran -lblas -llapack -lpython3.6m -o build/lib.linux-x86_64-3.6/kwant/linalg/_mumps.cpython-36m-x86_64-linux-gnu.so
271******************************** Build summary ********************************
272Default LAPACK and BLAS
273Auto-configured MUMPS
274*******************************************************************************
275$ ./setup.py build_ext -i
276kwant/graph/slicer.pyx: cannot find cimported module '.'
277kwant/linalg/lapack.pyx: cannot find cimported module '.'
278kwant/linalg/_mumps.pyx: cannot find cimported module '.'
279running build_ext
280copying build/lib.linux-x86_64-3.6/kwant/_system.cpython-36m-x86_64-linux-gnu.so -> kwant
281copying build/lib.linux-x86_64-3.6/kwant/operator.cpython-36m-x86_64-linux-gnu.so -> kwant
282copying build/lib.linux-x86_64-3.6/kwant/graph/core.cpython-36m-x86_64-linux-gnu.so -> kwant/graph
283copying build/lib.linux-x86_64-3.6/kwant/graph/utils.cpython-36m-x86_64-linux-gnu.so -> kwant/graph
284copying build/lib.linux-x86_64-3.6/kwant/graph/slicer.cpython-36m-x86_64-linux-gnu.so -> kwant/graph
285copying build/lib.linux-x86_64-3.6/kwant/linalg/lapack.cpython-36m-x86_64-linux-gnu.so -> kwant/linalg
286copying build/lib.linux-x86_64-3.6/kwant/linalg/_mumps.cpython-36m-x86_64-linux-gnu.so -> kwant/linalg
287******************************** Build summary ********************************
288Default LAPACK and BLAS
289Auto-configured MUMPS
290*******************************************************************************
291 Uploading artifacts... 00:07
292untracked: found 103 files
293Uploading artifacts to coordinator... ok id=43697 responseStatus=201 Created token=AxQ-z4PD
294Job succeeded