build lectures

Passed Started 3 years ago by
1Running with gitlab-runner 12.9.0 (4c96e5ad)
2  on universal-tn4 d3cf9985
 3  Preparing the "docker" executor  
  00:01
4Using Docker executor with image quantumtinkerer/research ...
5Authenticating with credentials from /root/.docker/config.json
6Pulling docker image quantumtinkerer/research ...
7Using docker image sha256:af26b63af6c46d7b8c2733f69ffca184ff76da56c93fe4a0eaf140efee0d989c for quantumtinkerer/research ...
 8  Preparing environment  
  00:04
9Authenticating with credentials from /root/.docker/config.json
10Running on runner-d3cf9985-project-713-concurrent-0 via tnw-tn4.tudelft.net...
 11  Getting source from Git repository  
  00:03
12Authenticating with credentials from /root/.docker/config.json
13Fetching changes...
14Reinitialized existing Git repository in /builds/solidstate/lectures/.git/
15From https://gitlab.kwant-project.org/solidstate/lectures
16 * [new ref]         8a42c7bef5a86b068cea2a8b1270a6806b7a2e2c -> refs/pipelines/61067
17   8fcc040..c11277d  local      -> origin/local
18   254bddf..8a42c7b  master     -> origin/master
19Checking out 8a42c7be as master...
20Removing site/
21Skipping Git submodules setup
 22  Restoring cache  
  00:04
23Authenticating with credentials from /root/.docker/config.json
 24  Downloading artifacts  
  00:03
25Authenticating with credentials from /root/.docker/config.json
 26  Running before_script and script  
  02:33
27Authenticating with credentials from /root/.docker/config.json
28$ pip install -Ur requirements.txt
29Collecting jupyter_client
30  Downloading jupyter_client-6.1.12-py3-none-any.whl (112 kB)
31Collecting ipython
32  Downloading ipython-7.22.0-py3-none-any.whl (785 kB)
33Collecting ipykernel
34  Downloading ipykernel-5.5.3-py3-none-any.whl (120 kB)
35Collecting pathlib
36  Downloading pathlib-1.0.1.tar.gz (49 kB)
37Requirement already up-to-date: nbconvert<6.0 in /opt/conda/lib/python3.7/site-packages (from -r requirements.txt (line 5)) (5.6.1)
38Collecting plotly
39  Downloading plotly-4.14.3-py2.py3-none-any.whl (13.2 MB)
40Collecting matplotlib
41  Downloading matplotlib-3.4.1-cp37-cp37m-manylinux1_x86_64.whl (10.3 MB)
42Collecting scipy
43  Downloading scipy-1.6.2-cp37-cp37m-manylinux1_x86_64.whl (27.4 MB)
44Collecting wikitables
45  Downloading wikitables-0.5.4-py2.py3-none-any.whl (11 kB)
46Collecting pandas
47  Downloading pandas-1.2.3-cp37-cp37m-manylinux1_x86_64.whl (9.9 MB)
48Collecting jupytext
49  Downloading jupytext-1.11.1-py3-none-any.whl (291 kB)
50Collecting python-markdown-math
51  Downloading python_markdown_math-0.8-py3-none-any.whl (5.9 kB)
52Collecting mkdocs-material<5
53  Downloading mkdocs_material-4.6.3-py2.py3-none-any.whl (723 kB)
54Collecting ics
55  Downloading ics-0.7-py2.py3-none-any.whl (42 kB)
56Requirement already satisfied, skipping upgrade: pyzmq>=13 in /opt/conda/lib/python3.7/site-packages (from jupyter_client->-r requirements.txt (line 1)) (19.0.0)
57Requirement already satisfied, skipping upgrade: tornado>=4.1 in /opt/conda/lib/python3.7/site-packages (from jupyter_client->-r requirements.txt (line 1)) (6.0.4)
58Requirement already satisfied, skipping upgrade: jupyter-core>=4.6.0 in /opt/conda/lib/python3.7/site-packages (from jupyter_client->-r requirements.txt (line 1)) (4.6.3)
59Requirement already satisfied, skipping upgrade: traitlets in /opt/conda/lib/python3.7/site-packages (from jupyter_client->-r requirements.txt (line 1)) (4.3.3)
60Requirement already satisfied, skipping upgrade: python-dateutil>=2.1 in /opt/conda/lib/python3.7/site-packages (from jupyter_client->-r requirements.txt (line 1)) (2.8.1)
61Requirement already satisfied, skipping upgrade: backcall in /opt/conda/lib/python3.7/site-packages (from ipython->-r requirements.txt (line 2)) (0.1.0)
62Requirement already satisfied, skipping upgrade: prompt-toolkit!=3.0.0,!=3.0.1,<3.1.0,>=2.0.0 in /opt/conda/lib/python3.7/site-packages (from ipython->-r requirements.txt (line 2)) (3.0.3)
63Requirement already satisfied, skipping upgrade: pexpect>4.3; sys_platform != "win32" in /opt/conda/lib/python3.7/site-packages (from ipython->-r requirements.txt (line 2)) (4.8.0)
64Requirement already satisfied, skipping upgrade: jedi>=0.16 in /opt/conda/lib/python3.7/site-packages (from ipython->-r requirements.txt (line 2)) (0.16.0)
65Requirement already satisfied, skipping upgrade: pickleshare in /opt/conda/lib/python3.7/site-packages (from ipython->-r requirements.txt (line 2)) (0.7.5)
66Requirement already satisfied, skipping upgrade: pygments in /opt/conda/lib/python3.7/site-packages (from ipython->-r requirements.txt (line 2)) (2.5.2)
67Requirement already satisfied, skipping upgrade: decorator in /opt/conda/lib/python3.7/site-packages (from ipython->-r requirements.txt (line 2)) (4.4.2)
68Requirement already satisfied, skipping upgrade: setuptools>=18.5 in /opt/conda/lib/python3.7/site-packages (from ipython->-r requirements.txt (line 2)) (45.2.0.post20200209)
69Requirement already satisfied, skipping upgrade: testpath in /opt/conda/lib/python3.7/site-packages (from nbconvert<6.0->-r requirements.txt (line 5)) (0.4.4)
70Requirement already satisfied, skipping upgrade: entrypoints>=0.2.2 in /opt/conda/lib/python3.7/site-packages (from nbconvert<6.0->-r requirements.txt (line 5)) (0.3)
71Requirement already satisfied, skipping upgrade: mistune<2,>=0.8.1 in /opt/conda/lib/python3.7/site-packages (from nbconvert<6.0->-r requirements.txt (line 5)) (0.8.4)
72Requirement already satisfied, skipping upgrade: nbformat>=4.4 in /opt/conda/lib/python3.7/site-packages (from nbconvert<6.0->-r requirements.txt (line 5)) (5.0.4)
73Requirement already satisfied, skipping upgrade: bleach in /opt/conda/lib/python3.7/site-packages (from nbconvert<6.0->-r requirements.txt (line 5)) (3.1.1)
74Requirement already satisfied, skipping upgrade: pandocfilters>=1.4.1 in /opt/conda/lib/python3.7/site-packages (from nbconvert<6.0->-r requirements.txt (line 5)) (1.4.2)
75Requirement already satisfied, skipping upgrade: defusedxml in /opt/conda/lib/python3.7/site-packages (from nbconvert<6.0->-r requirements.txt (line 5)) (0.6.0)
76Requirement already satisfied, skipping upgrade: jinja2>=2.4 in /opt/conda/lib/python3.7/site-packages (from nbconvert<6.0->-r requirements.txt (line 5)) (2.11.1)
77Requirement already satisfied, skipping upgrade: retrying>=1.3.3 in /opt/conda/lib/python3.7/site-packages (from plotly->-r requirements.txt (line 6)) (1.3.3)
78Requirement already satisfied, skipping upgrade: six in /opt/conda/lib/python3.7/site-packages (from plotly->-r requirements.txt (line 6)) (1.14.0)
79Requirement already satisfied, skipping upgrade: kiwisolver>=1.0.1 in /opt/conda/lib/python3.7/site-packages (from matplotlib->-r requirements.txt (line 7)) (1.1.0)
80Requirement already satisfied, skipping upgrade: numpy>=1.16 in /opt/conda/lib/python3.7/site-packages (from matplotlib->-r requirements.txt (line 7)) (1.17.5)
81Requirement already satisfied, skipping upgrade: cycler>=0.10 in /opt/conda/lib/python3.7/site-packages (from matplotlib->-r requirements.txt (line 7)) (0.10.0)
82Requirement already satisfied, skipping upgrade: pyparsing>=2.2.1 in /opt/conda/lib/python3.7/site-packages (from matplotlib->-r requirements.txt (line 7)) (2.4.6)
83Requirement already satisfied, skipping upgrade: pillow>=6.2.0 in /opt/conda/lib/python3.7/site-packages (from matplotlib->-r requirements.txt (line 7)) (7.0.0)
84Collecting mwparserfromhell>=0.4.3
85  Downloading mwparserfromhell-0.6-cp37-cp37m-manylinux1_x86_64.whl (174 kB)
86Requirement already satisfied, skipping upgrade: requests>=2.9.1 in /opt/conda/lib/python3.7/site-packages (from wikitables->-r requirements.txt (line 9)) (2.23.0)
87Requirement already satisfied, skipping upgrade: pytz>=2017.3 in /opt/conda/lib/python3.7/site-packages (from pandas->-r requirements.txt (line 10)) (2019.3)
88Collecting markdown-it-py~=0.6.0
89  Downloading markdown_it_py-0.6.2-py3-none-any.whl (81 kB)
90Requirement already satisfied, skipping upgrade: pyyaml in /opt/conda/lib/python3.7/site-packages (from jupytext->-r requirements.txt (line 11)) (5.3)
91Requirement already satisfied, skipping upgrade: toml in /opt/conda/lib/python3.7/site-packages (from jupytext->-r requirements.txt (line 11)) (0.10.0)
92Collecting Markdown>=3.0
93  Downloading Markdown-3.3.4-py3-none-any.whl (97 kB)
94Collecting pymdown-extensions>=6.3
95  Downloading pymdown_extensions-8.1.1-py3-none-any.whl (206 kB)
96Collecting mkdocs>=1.0
97  Downloading mkdocs-1.1.2-py3-none-any.whl (6.4 MB)
98Collecting tatsu>4.2
99  Downloading TatSu-4.4.0-py2.py3-none-any.whl (85 kB)
100Collecting arrow<0.15,>=0.11
101  Downloading arrow-0.14.7-py2.py3-none-any.whl (39 kB)
102Requirement already satisfied, skipping upgrade: ipython-genutils in /opt/conda/lib/python3.7/site-packages (from traitlets->jupyter_client->-r requirements.txt (line 1)) (0.2.0)
103Requirement already satisfied, skipping upgrade: wcwidth in /opt/conda/lib/python3.7/site-packages (from prompt-toolkit!=3.0.0,!=3.0.1,<3.1.0,>=2.0.0->ipython->-r requirements.txt (line 2)) (0.1.8)
104Requirement already satisfied, skipping upgrade: ptyprocess>=0.5 in /opt/conda/lib/python3.7/site-packages (from pexpect>4.3; sys_platform != "win32"->ipython->-r requirements.txt (line 2)) (0.6.0)
105Requirement already satisfied, skipping upgrade: parso>=0.5.2 in /opt/conda/lib/python3.7/site-packages (from jedi>=0.16->ipython->-r requirements.txt (line 2)) (0.6.2)
106Requirement already satisfied, skipping upgrade: jsonschema!=2.5.0,>=2.4 in /opt/conda/lib/python3.7/site-packages (from nbformat>=4.4->nbconvert<6.0->-r requirements.txt (line 5)) (3.2.0)
107Requirement already satisfied, skipping upgrade: webencodings in /opt/conda/lib/python3.7/site-packages (from bleach->nbconvert<6.0->-r requirements.txt (line 5)) (0.5.1)
108Requirement already satisfied, skipping upgrade: MarkupSafe>=0.23 in /opt/conda/lib/python3.7/site-packages (from jinja2>=2.4->nbconvert<6.0->-r requirements.txt (line 5)) (1.1.1)
109Requirement already satisfied, skipping upgrade: urllib3!=1.25.0,!=1.25.1,<1.26,>=1.21.1 in /opt/conda/lib/python3.7/site-packages (from requests>=2.9.1->wikitables->-r requirements.txt (line 9)) (1.25.7)
110Requirement already satisfied, skipping upgrade: idna<3,>=2.5 in /opt/conda/lib/python3.7/site-packages (from requests>=2.9.1->wikitables->-r requirements.txt (line 9)) (2.9)
111Requirement already satisfied, skipping upgrade: chardet<4,>=3.0.2 in /opt/conda/lib/python3.7/site-packages (from requests>=2.9.1->wikitables->-r requirements.txt (line 9)) (3.0.4)
112Requirement already satisfied, skipping upgrade: certifi>=2017.4.17 in /opt/conda/lib/python3.7/site-packages (from requests>=2.9.1->wikitables->-r requirements.txt (line 9)) (2019.11.28)
113Requirement already satisfied, skipping upgrade: attrs<21,>=19 in /opt/conda/lib/python3.7/site-packages (from markdown-it-py~=0.6.0->jupytext->-r requirements.txt (line 11)) (19.3.0)
114Collecting mdit-py-plugins~=0.2.1
115  Downloading mdit_py_plugins-0.2.6-py3-none-any.whl (39 kB)
116Requirement already satisfied, skipping upgrade: importlib-metadata; python_version < "3.8" in /opt/conda/lib/python3.7/site-packages (from Markdown>=3.0->python-markdown-math->-r requirements.txt (line 12)) (1.5.0)
117Collecting livereload>=2.5.1
118  Downloading livereload-2.6.3.tar.gz (25 kB)
119Collecting lunr[languages]==0.5.8
120  Downloading lunr-0.5.8-py2.py3-none-any.whl (2.3 MB)
121Requirement already satisfied, skipping upgrade: click>=3.3 in /opt/conda/lib/python3.7/site-packages (from mkdocs>=1.0->mkdocs-material<5->-r requirements.txt (line 13)) (7.0)
122Requirement already satisfied, skipping upgrade: pyrsistent>=0.14.0 in /opt/conda/lib/python3.7/site-packages (from jsonschema!=2.5.0,>=2.4->nbformat>=4.4->nbconvert<6.0->-r requirements.txt (line 5)) (0.15.7)
123Requirement already satisfied, skipping upgrade: zipp>=0.5 in /opt/conda/lib/python3.7/site-packages (from importlib-metadata; python_version < "3.8"->Markdown>=3.0->python-markdown-math->-r requirements.txt (line 12)) (3.1.0)
124Collecting future>=0.16.0
125  Downloading future-0.18.2.tar.gz (829 kB)
126Collecting nltk>=3.2.5; python_version > "2.7" and extra == "languages"
127  Downloading nltk-3.5.zip (1.4 MB)
128Collecting joblib
129  Downloading joblib-1.0.1-py3-none-any.whl (303 kB)
130Requirement already satisfied, skipping upgrade: regex in /opt/conda/lib/python3.7/site-packages (from nltk>=3.2.5; python_version > "2.7" and extra == "languages"->lunr[languages]==0.5.8->mkdocs>=1.0->mkdocs-material<5->-r requirements.txt (line 13)) (2020.2.20)
131Requirement already satisfied, skipping upgrade: tqdm in /opt/conda/lib/python3.7/site-packages (from nltk>=3.2.5; python_version > "2.7" and extra == "languages"->lunr[languages]==0.5.8->mkdocs>=1.0->mkdocs-material<5->-r requirements.txt (line 13)) (4.43.0)
132Building wheels for collected packages: pathlib, livereload, future, nltk
133  Building wheel for pathlib (setup.py): started
134  Building wheel for pathlib (setup.py): finished with status 'done'
135  Created wheel for pathlib: filename=pathlib-1.0.1-py3-none-any.whl size=14346 sha256=9c538ac14a533cbedbe0ce7eb13d18a12698121ed05cc35c0c7b4049cb8eb3e3
136  Stored in directory: /home/jovyan/.cache/pip/wheels/6e/96/b8/10037fe231e23970bac58361d7c93571ab983a7bbc55e68550
137  Building wheel for livereload (setup.py): started
138  Building wheel for livereload (setup.py): finished with status 'done'
139  Created wheel for livereload: filename=livereload-2.6.3-py2.py3-none-any.whl size=24713 sha256=adf5e09caaa9aa963d96a4f7aac6d99d6f681b9c501cbca8fc83138cabc74b9b
140  Stored in directory: /home/jovyan/.cache/pip/wheels/d4/f2/03/55f37093eb8cb0c89d7efb206f792dba55cd5bd67b1c5b1ce1
141  Building wheel for future (setup.py): started
142  Building wheel for future (setup.py): finished with status 'done'
143  Created wheel for future: filename=future-0.18.2-py3-none-any.whl size=491058 sha256=52ac5ef49c204d971fda013e203b3f4fdfd6005bf561564b2dc7b15d4c04bd47
144  Stored in directory: /home/jovyan/.cache/pip/wheels/56/b0/fe/4410d17b32f1f0c3cf54cdfb2bc04d7b4b8f4ae377e2229ba0
145  Building wheel for nltk (setup.py): started
146  Building wheel for nltk (setup.py): finished with status 'done'
147  Created wheel for nltk: filename=nltk-3.5-py3-none-any.whl size=1434677 sha256=972fc8119add35db7c089341e6f396e6c05244a0fc41cae362578e03473537ed
148  Stored in directory: /home/jovyan/.cache/pip/wheels/45/6c/46/a1865e7ba706b3817f5d1b2ff7ce8996aabdd0d03d47ba0266
149Successfully built pathlib livereload future nltk
150Installing collected packages: jupyter-client, ipython, ipykernel, pathlib, plotly, matplotlib, scipy, mwparserfromhell, wikitables, pandas, mdit-py-plugins, markdown-it-py, jupytext, Markdown, python-markdown-math, pymdown-extensions, livereload, future, joblib, nltk, lunr, mkdocs, mkdocs-material, tatsu, arrow, ics
151  Attempting uninstall: jupyter-client
152    Found existing installation: jupyter-client 6.0.0
153    Uninstalling jupyter-client-6.0.0:
154      Successfully uninstalled jupyter-client-6.0.0
155  Attempting uninstall: ipython
156    Found existing installation: ipython 7.13.0
157    Uninstalling ipython-7.13.0:
158      Successfully uninstalled ipython-7.13.0
159  Attempting uninstall: ipykernel
160    Found existing installation: ipykernel 5.1.4
161    Uninstalling ipykernel-5.1.4:
162      Successfully uninstalled ipykernel-5.1.4
163  Attempting uninstall: plotly
164    Found existing installation: plotly 4.5.3
165    Uninstalling plotly-4.5.3:
166      Successfully uninstalled plotly-4.5.3
167  Attempting uninstall: matplotlib
168    Found existing installation: matplotlib 3.1.3
169    Uninstalling matplotlib-3.1.3:
170      Successfully uninstalled matplotlib-3.1.3
171  Attempting uninstall: scipy
172    Found existing installation: scipy 1.3.3
173    Uninstalling scipy-1.3.3:
174      Successfully uninstalled scipy-1.3.3
175  Attempting uninstall: pandas
176    Found existing installation: pandas 1.0.1
177    Uninstalling pandas-1.0.1:
178      Successfully uninstalled pandas-1.0.1
179  Attempting uninstall: jupytext
180    Found existing installation: jupytext 1.3.4
181    Uninstalling jupytext-1.3.4:
182      Successfully uninstalled jupytext-1.3.4
183Successfully installed Markdown-3.3.4 arrow-0.14.7 future-0.18.2 ics-0.7 ipykernel-5.5.3 ipython-7.22.0 joblib-1.0.1 jupyter-client-6.1.12 jupytext-1.11.1 livereload-2.6.3 lunr-0.5.8 markdown-it-py-0.6.2 matplotlib-3.4.1 mdit-py-plugins-0.2.6 mkdocs-1.1.2 mkdocs-material-4.6.3 mwparserfromhell-0.6 nltk-3.5 pandas-1.2.3 pathlib-1.0.1 plotly-4.14.3 pymdown-extensions-8.1.1 python-markdown-math-0.8 scipy-1.6.2 tatsu-4.4.0 wikitables-0.5.4
184$ python convert_timetable.py
185$ python execute.py
186$ mkdocs build
187INFO    -  Cleaning site directory 
188INFO    -  Building documentation to directory: /builds/solidstate/lectures/site 
189INFO    -  The following pages exist in the docs directory, but are not included in the "nav" configuration:
190  - fermi_surfaces.md 
191INFO    -  Documentation built in 3.03 seconds 
 192  Running after_script  
  00:02
 193  Saving cache  
  00:03
194Authenticating with credentials from /root/.docker/config.json
 195  Uploading artifacts for successful job  
  00:11
196Authenticating with credentials from /root/.docker/config.json
197Uploading artifacts...
198site: found 330 matching files                     
199Uploading artifacts to coordinator... ok            id=181356 responseStatus=201 Created token=zr5w9kcn
200Job succeeded