Closes #214.

I assume that most people encounter the tutorial example scripts by
reading the documentation, and not by viewing the tutorial subdirectory
of a checked-out Kwant source.

That's the motivation for moving all the manipulations of tutorial
scripts from setup.py to doc/Makefile.  Previously, a successful 'make
html' would require a preceding execution of 'setup.py build_tut'.  Now,
a simple 'make html' is enough.

While at it, I reorganized where the example scripts and their outputs
are stored.  Everything is now in 'doc/source/code' with its three
subdirectories 'download' (to be shown to readers), 'include' (with
include markers), and 'figure' (figure generation & figures).  This
organization is clearer and also makes the generation of figures
separate from the tutorial.

The basic idea remains the same, but should work much better now.  The
difference is that images/example.py.diff is now a patch with complete
context and becomes the authoritative source for both the visible flavor
of an example as well as for its figure-generating variant.  Both
tutorial/example.py and images/example.py are extracted from this file
by 'make html'.  Thanks to the complete context the diffs are quite
readable and may be modified directly.

Alternatively, one may also modify the generated scripts.  When
tutorial/example.py has been modified, it will be patched and saved as
images/example.py.  The patching is done using the tool 'wiggle' that
works much better than 'patch'.  If a conflict occurs, conflict markers
are added to the output file and its dated back to the dawn of time
(i.e. 1970) in order to mark the conflicts as not yet resolved.  After
resolving, 'make html' is simply run again.

Upon a successful execution of the figure-generating script the diff
gets recreated automatically, 'generate-diffs' no longer exists.

closes #125

Rafal Skolasinski authored 7 years ago and Joseph Weston committed 7 years ago

Current implementation uses ``kwant.physics.Bands``. This example fails
when one substitute ``k_x**2`` with for example ``k_x**4`` due to farther
then nearest neighbours hoppings. Using wraparound provides also easier way
to extend it to multidimensional band structures (except of plotting).