Failed to install `kwant` while creating the python virtualenv for the topocm project using pip.
On Ubuntu 20.04.3 LTS, I try to create the python virtualenv for the topocm project using pip, but failed to install kwant
. The errors are shown as follows:
$ env PYTHON_CONFIGURE_OPTS="--enable-shared" pyenv install 3.9.9
$ pyenv shell 3.9.9
$ pyenv virtualenv --system-site-packages topocm_content
$ pyenv shell topocm_content
$ git clone https://github.com/topocm/topocm_content.git topocm_content.git
$ cd topocm_content.git
$ awk '/dependencies:/{a=NR}; {b[NR]=$0} END { for (i=1; i<=NR; i++) if (i>a && b[i] !~ / (python=|pip:)/) {split(b[i],c," "); print c[length(c)]}}' environment.yml | sed -re 's/(=|>|<).*$//;s/matplotlib-base/matplotlib/' | xargs -n1 pip install
[...]
site-packages (from kwant) (1.2.4)
Building wheels for collected packages: kwant
Building wheel for kwant (setup.py) ... error
ERROR: Command errored out with exit status 1:
command: /home/apollo/.pyenv/versions/3.9.9/envs/topocm_content/bin/python3.9 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-g88pezou/kwant_a38bc6e2ba564bdcbba8cecb5189e3b9/setup.py'"'"'; __file__='"'"'/tmp/pip-install-g88pezou/kwant_a38bc6e2ba564bdcbba8cecb5189e3b9/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-8uut3w4v
cwd: /tmp/pip-install-g88pezou/kwant_a38bc6e2ba564bdcbba8cecb5189e3b9/
Complete output (259 lines):
running bdist_wheel
running build
running build_py
creating build
creating build/lib.linux-x86_64-3.9
creating build/lib.linux-x86_64-3.9/kwant
copying kwant/__init__.py -> build/lib.linux-x86_64-3.9/kwant
copying kwant/version.py -> build/lib.linux-x86_64-3.9/kwant
copying kwant/kpm.py -> build/lib.linux-x86_64-3.9/kwant
copying kwant/_plotter.py -> build/lib.linux-x86_64-3.9/kwant
copying kwant/lattice.py -> build/lib.linux-x86_64-3.9/kwant
copying kwant/system.py -> build/lib.linux-x86_64-3.9/kwant
copying kwant/_common.py -> build/lib.linux-x86_64-3.9/kwant
copying kwant/rmt.py -> build/lib.linux-x86_64-3.9/kwant
copying kwant/wraparound.py -> build/lib.linux-x86_64-3.9/kwant
copying kwant/_kwant_version.py -> build/lib.linux-x86_64-3.9/kwant
copying kwant/plotter.py -> build/lib.linux-x86_64-3.9/kwant
copying kwant/_colormaps.py -> build/lib.linux-x86_64-3.9/kwant
copying kwant/builder.py -> build/lib.linux-x86_64-3.9/kwant
copying kwant/digest.py -> build/lib.linux-x86_64-3.9/kwant
copying kwant/qsymm.py -> build/lib.linux-x86_64-3.9/kwant
creating build/lib.linux-x86_64-3.9/kwant/physics
copying kwant/physics/symmetry.py -> build/lib.linux-x86_64-3.9/kwant/physics
copying kwant/physics/__init__.py -> build/lib.linux-x86_64-3.9/kwant/physics
copying kwant/physics/noise.py -> build/lib.linux-x86_64-3.9/kwant/physics
copying kwant/physics/leads.py -> build/lib.linux-x86_64-3.9/kwant/physics
copying kwant/physics/gauge.py -> build/lib.linux-x86_64-3.9/kwant/physics
copying kwant/physics/dispersion.py -> build/lib.linux-x86_64-3.9/kwant/physics
creating build/lib.linux-x86_64-3.9/kwant/continuum
copying kwant/continuum/__init__.py -> build/lib.linux-x86_64-3.9/kwant/continuum
copying kwant/continuum/_common.py -> build/lib.linux-x86_64-3.9/kwant/continuum
copying kwant/continuum/discretizer.py -> build/lib.linux-x86_64-3.9/kwant/continuum
creating build/lib.linux-x86_64-3.9/kwant/tests
copying kwant/tests/test_comprehensive.py -> build/lib.linux-x86_64-3.9/kwant/tests
copying kwant/tests/test_kpm.py -> build/lib.linux-x86_64-3.9/kwant/tests
copying kwant/tests/__init__.py -> build/lib.linux-x86_64-3.9/kwant/tests
copying kwant/tests/test_rmt.py -> build/lib.linux-x86_64-3.9/kwant/tests
copying kwant/tests/test_lattice.py -> build/lib.linux-x86_64-3.9/kwant/tests
copying kwant/tests/test_system.py -> build/lib.linux-x86_64-3.9/kwant/tests
copying kwant/tests/test_wraparound.py -> build/lib.linux-x86_64-3.9/kwant/tests
copying kwant/tests/test_operator.py -> build/lib.linux-x86_64-3.9/kwant/tests
copying kwant/tests/test_builder.py -> build/lib.linux-x86_64-3.9/kwant/tests
copying kwant/tests/test_plotter.py -> build/lib.linux-x86_64-3.9/kwant/tests
copying kwant/tests/test_qsymm.py -> build/lib.linux-x86_64-3.9/kwant/tests
creating build/lib.linux-x86_64-3.9/kwant/graph
copying kwant/graph/defs.py -> build/lib.linux-x86_64-3.9/kwant/graph
copying kwant/graph/__init__.py -> build/lib.linux-x86_64-3.9/kwant/graph
creating build/lib.linux-x86_64-3.9/kwant/solvers
copying kwant/solvers/sparse.py -> build/lib.linux-x86_64-3.9/kwant/solvers
copying kwant/solvers/__init__.py -> build/lib.linux-x86_64-3.9/kwant/solvers
copying kwant/solvers/common.py -> build/lib.linux-x86_64-3.9/kwant/solvers
copying kwant/solvers/default.py -> build/lib.linux-x86_64-3.9/kwant/solvers
copying kwant/solvers/mumps.py -> build/lib.linux-x86_64-3.9/kwant/solvers
creating build/lib.linux-x86_64-3.9/kwant/linalg
copying kwant/linalg/__init__.py -> build/lib.linux-x86_64-3.9/kwant/linalg
copying kwant/linalg/decomp_ev.py -> build/lib.linux-x86_64-3.9/kwant/linalg
copying kwant/linalg/fortran_helpers.py -> build/lib.linux-x86_64-3.9/kwant/linalg
copying kwant/linalg/decomp_schur.py -> build/lib.linux-x86_64-3.9/kwant/linalg
copying kwant/linalg/cmumps.py -> build/lib.linux-x86_64-3.9/kwant/linalg
copying kwant/linalg/decomp_lu.py -> build/lib.linux-x86_64-3.9/kwant/linalg
copying kwant/linalg/lll.py -> build/lib.linux-x86_64-3.9/kwant/linalg
copying kwant/linalg/mumps.py -> build/lib.linux-x86_64-3.9/kwant/linalg
creating build/lib.linux-x86_64-3.9/kwant/physics/tests
copying kwant/physics/tests/test_symmetry.py -> build/lib.linux-x86_64-3.9/kwant/physics/tests
copying kwant/physics/tests/__init__.py -> build/lib.linux-x86_64-3.9/kwant/physics/tests
copying kwant/physics/tests/test_noise.py -> build/lib.linux-x86_64-3.9/kwant/physics/tests
copying kwant/physics/tests/test_leads.py -> build/lib.linux-x86_64-3.9/kwant/physics/tests
copying kwant/physics/tests/test_dispersion.py -> build/lib.linux-x86_64-3.9/kwant/physics/tests
copying kwant/physics/tests/test_gauge.py -> build/lib.linux-x86_64-3.9/kwant/physics/tests
creating build/lib.linux-x86_64-3.9/kwant/continuum/tests
copying kwant/continuum/tests/__init__.py -> build/lib.linux-x86_64-3.9/kwant/continuum/tests
copying kwant/continuum/tests/test_discretizer.py -> build/lib.linux-x86_64-3.9/kwant/continuum/tests
copying kwant/continuum/tests/test_common.py -> build/lib.linux-x86_64-3.9/kwant/continuum/tests
creating build/lib.linux-x86_64-3.9/kwant/graph/tests
copying kwant/graph/tests/__init__.py -> build/lib.linux-x86_64-3.9/kwant/graph/tests
copying kwant/graph/tests/test_core.py -> build/lib.linux-x86_64-3.9/kwant/graph/tests
copying kwant/graph/tests/test_scotch.py -> build/lib.linux-x86_64-3.9/kwant/graph/tests
creating build/lib.linux-x86_64-3.9/kwant/solvers/tests
copying kwant/solvers/tests/__init__.py -> build/lib.linux-x86_64-3.9/kwant/solvers/tests
copying kwant/solvers/tests/test_sparse.py -> build/lib.linux-x86_64-3.9/kwant/solvers/tests
copying kwant/solvers/tests/test_mumps.py -> build/lib.linux-x86_64-3.9/kwant/solvers/tests
copying kwant/solvers/tests/_test_sparse.py -> build/lib.linux-x86_64-3.9/kwant/solvers/tests
creating build/lib.linux-x86_64-3.9/kwant/linalg/tests
copying kwant/linalg/tests/__init__.py -> build/lib.linux-x86_64-3.9/kwant/linalg/tests
copying kwant/linalg/tests/_test_utils.py -> build/lib.linux-x86_64-3.9/kwant/linalg/tests
copying kwant/linalg/tests/test_linalg.py -> build/lib.linux-x86_64-3.9/kwant/linalg/tests
copying kwant/linalg/tests/test_lll.py -> build/lib.linux-x86_64-3.9/kwant/linalg/tests
copying kwant/linalg/tests/test_mumps.py -> build/lib.linux-x86_64-3.9/kwant/linalg/tests
copying kwant/operator.pxd -> build/lib.linux-x86_64-3.9/kwant
copying kwant/graph/core.pxd -> build/lib.linux-x86_64-3.9/kwant/graph
copying kwant/graph/defs.pxd -> build/lib.linux-x86_64-3.9/kwant/graph
copying kwant/graph/c_scotch.pxd -> build/lib.linux-x86_64-3.9/kwant/graph
copying kwant/graph/defs.h -> build/lib.linux-x86_64-3.9/kwant/graph
copying kwant/linalg/cmumps.pxd -> build/lib.linux-x86_64-3.9/kwant/linalg
running build_ext
building 'kwant._system' extension
creating build/temp.linux-x86_64-3.9
creating build/temp.linux-x86_64-3.9/kwant
gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -Ikwant/graph -I/home/apollo/.pyenv/versions/3.9.9/envs/topocm_content/lib/python3.9/site-packages/numpy/core/include -I/home/apollo/.pyenv/versions/3.9.9/envs/topocm_content/include -I/home/apollo/.pyenv/versions/3.9.9/include/python3.9 -c kwant/_system.c -o build/temp.linux-x86_64-3.9/kwant/_system.o
In file included from /home/apollo/.pyenv/versions/3.9.9/envs/topocm_content/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
from /home/apollo/.pyenv/versions/3.9.9/envs/topocm_content/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /home/apollo/.pyenv/versions/3.9.9/envs/topocm_content/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4,
from kwant/_system.c:639:
/home/apollo/.pyenv/versions/3.9.9/envs/topocm_content/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
17 | #warning "Using deprecated NumPy API, disable it with " \
| ^~~~~~~
kwant/_system.c: In function ‘__Pyx_modinit_type_init_code’:
kwant/_system.c:29696:71: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’
29696 | __pyx_type_5kwant_7_system___pyx_scope_struct__hamiltonian_submatrix.tp_print = 0;
| ^
kwant/_system.c:29702:58: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’
29702 | __pyx_type_5kwant_7_system___pyx_scope_struct_1_genexpr.tp_print = 0;
| ^
kwant/_system.c:29708:58: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’
29708 | __pyx_type_5kwant_7_system___pyx_scope_struct_2_genexpr.tp_print = 0;
| ^
kwant/_system.c:29716:25: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’
29716 | __pyx_type___pyx_array.tp_print = 0;
| ^
kwant/_system.c:29721:31: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’
29721 | __pyx_type___pyx_MemviewEnum.tp_print = 0;
| ^
kwant/_system.c:29736:30: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’
29736 | __pyx_type___pyx_memoryview.tp_print = 0;
| ^
kwant/_system.c:29749:35: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’
29749 | __pyx_type___pyx_memoryviewslice.tp_print = 0;
| ^
kwant/_system.c: In function ‘__Pyx_ParseOptionalKeywords’:
kwant/_system.c:30619:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
30619 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
| ^
In file included from /home/apollo/.pyenv/versions/3.9.9/include/python3.9/unicodeobject.h:1026,
from /home/apollo/.pyenv/versions/3.9.9/include/python3.9/Python.h:93,
from kwant/_system.c:30:
/home/apollo/.pyenv/versions/3.9.9/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
kwant/_system.c:30619:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
30619 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
| ^
In file included from /home/apollo/.pyenv/versions/3.9.9/include/python3.9/unicodeobject.h:1026,
from /home/apollo/.pyenv/versions/3.9.9/include/python3.9/Python.h:93,
from kwant/_system.c:30:
/home/apollo/.pyenv/versions/3.9.9/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
| ^~~~~~~~~~~~~~~~~~~
kwant/_system.c:30619:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
30619 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
| ^
In file included from /home/apollo/.pyenv/versions/3.9.9/include/python3.9/unicodeobject.h:1026,
from /home/apollo/.pyenv/versions/3.9.9/include/python3.9/Python.h:93,
from kwant/_system.c:30:
/home/apollo/.pyenv/versions/3.9.9/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
kwant/_system.c:30619:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
30619 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
| ^
In file included from /home/apollo/.pyenv/versions/3.9.9/include/python3.9/unicodeobject.h:1026,
from /home/apollo/.pyenv/versions/3.9.9/include/python3.9/Python.h:93,
from kwant/_system.c:30:
/home/apollo/.pyenv/versions/3.9.9/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
kwant/_system.c:30619:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
30619 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
| ^
In file included from /home/apollo/.pyenv/versions/3.9.9/include/python3.9/unicodeobject.h:1026,
from /home/apollo/.pyenv/versions/3.9.9/include/python3.9/Python.h:93,
from kwant/_system.c:30:
/home/apollo/.pyenv/versions/3.9.9/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
| ^~~~~~~~~~~~~~~~~~~
kwant/_system.c:30619:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
30619 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
| ^
In file included from /home/apollo/.pyenv/versions/3.9.9/include/python3.9/unicodeobject.h:1026,
from /home/apollo/.pyenv/versions/3.9.9/include/python3.9/Python.h:93,
from kwant/_system.c:30:
/home/apollo/.pyenv/versions/3.9.9/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
kwant/_system.c:30635:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
30635 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
| ^
In file included from /home/apollo/.pyenv/versions/3.9.9/include/python3.9/unicodeobject.h:1026,
from /home/apollo/.pyenv/versions/3.9.9/include/python3.9/Python.h:93,
from kwant/_system.c:30:
/home/apollo/.pyenv/versions/3.9.9/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
kwant/_system.c:30635:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
30635 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
| ^
In file included from /home/apollo/.pyenv/versions/3.9.9/include/python3.9/unicodeobject.h:1026,
from /home/apollo/.pyenv/versions/3.9.9/include/python3.9/Python.h:93,
from kwant/_system.c:30:
/home/apollo/.pyenv/versions/3.9.9/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
| ^~~~~~~~~~~~~~~~~~~
kwant/_system.c:30635:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
30635 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
| ^
In file included from /home/apollo/.pyenv/versions/3.9.9/include/python3.9/unicodeobject.h:1026,
from /home/apollo/.pyenv/versions/3.9.9/include/python3.9/Python.h:93,
from kwant/_system.c:30:
/home/apollo/.pyenv/versions/3.9.9/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
kwant/_system.c:30635:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
30635 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
| ^
In file included from /home/apollo/.pyenv/versions/3.9.9/include/python3.9/unicodeobject.h:1026,
from /home/apollo/.pyenv/versions/3.9.9/include/python3.9/Python.h:93,
from kwant/_system.c:30:
/home/apollo/.pyenv/versions/3.9.9/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
kwant/_system.c:30635:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
30635 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
| ^
In file included from /home/apollo/.pyenv/versions/3.9.9/include/python3.9/unicodeobject.h:1026,
from /home/apollo/.pyenv/versions/3.9.9/include/python3.9/Python.h:93,
from kwant/_system.c:30:
/home/apollo/.pyenv/versions/3.9.9/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
| ^~~~~~~~~~~~~~~~~~~
kwant/_system.c:30635:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
30635 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
| ^
In file included from /home/apollo/.pyenv/versions/3.9.9/include/python3.9/unicodeobject.h:1026,
from /home/apollo/.pyenv/versions/3.9.9/include/python3.9/Python.h:93,
from kwant/_system.c:30:
/home/apollo/.pyenv/versions/3.9.9/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
kwant/_system.c: In function ‘__Pyx_decode_c_string’:
kwant/_system.c:32354:9: warning: ‘PyUnicode_FromUnicode’ is deprecated [-Wdeprecated-declarations]
32354 | return PyUnicode_FromUnicode(NULL, 0);
| ^~~~~~
In file included from /home/apollo/.pyenv/versions/3.9.9/include/python3.9/unicodeobject.h:1026,
from /home/apollo/.pyenv/versions/3.9.9/include/python3.9/Python.h:93,
from kwant/_system.c:30:
/home/apollo/.pyenv/versions/3.9.9/include/python3.9/cpython/unicodeobject.h:551:42: note: declared here
551 | Py_DEPRECATED(3.3) PyAPI_FUNC(PyObject*) PyUnicode_FromUnicode(
| ^~~~~~~~~~~~~~~~~~~~~
************************************ Error ************************************
The compilation of Kwant has failed. Please examine the error message
above and consult the installation instructions in README.rst.
You might have to customize build.conf.
Build configuration was:
['No MUMPS support']
*******************************************************************************
error: command '/usr/bin/gcc' failed with exit code 1
----------------------------------------
ERROR: Failed building wheel for kwant
Running setup.py clean for kwant
Failed to build kwant
Installing collected packages: kwant
Running setup.py install for kwant ... error
ERROR: Command errored out with exit status 1:
command: /home/apollo/.pyenv/versions/3.9.9/envs/topocm_content/bin/python3.9 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-g88pezou/kwant_a38bc6e2ba564bdcbba8cecb5189e3b9/setup.py'"'"'; __file__='"'"'/tmp/pip-install-g88pezou/kwant_a38bc6e2ba564bdcbba8cecb5189e3b9/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /tmp/pip-record-d0oj02ws/install-record.txt --single-version-externally-managed --compile --install-headers /home/apollo/.pyenv/versions/3.9.9/envs/topocm_content/include/site/python3.9/kwant
cwd: /tmp/pip-install-g88pezou/kwant_a38bc6e2ba564bdcbba8cecb5189e3b9/
Complete output (259 lines):
running install
running build
running build_py
creating build
creating build/lib.linux-x86_64-3.9
creating build/lib.linux-x86_64-3.9/kwant
copying kwant/__init__.py -> build/lib.linux-x86_64-3.9/kwant
copying kwant/version.py -> build/lib.linux-x86_64-3.9/kwant
copying kwant/kpm.py -> build/lib.linux-x86_64-3.9/kwant
copying kwant/_plotter.py -> build/lib.linux-x86_64-3.9/kwant
copying kwant/lattice.py -> build/lib.linux-x86_64-3.9/kwant
copying kwant/system.py -> build/lib.linux-x86_64-3.9/kwant
copying kwant/_common.py -> build/lib.linux-x86_64-3.9/kwant
copying kwant/rmt.py -> build/lib.linux-x86_64-3.9/kwant
copying kwant/wraparound.py -> build/lib.linux-x86_64-3.9/kwant
copying kwant/_kwant_version.py -> build/lib.linux-x86_64-3.9/kwant
copying kwant/plotter.py -> build/lib.linux-x86_64-3.9/kwant
copying kwant/_colormaps.py -> build/lib.linux-x86_64-3.9/kwant
copying kwant/builder.py -> build/lib.linux-x86_64-3.9/kwant
copying kwant/digest.py -> build/lib.linux-x86_64-3.9/kwant
copying kwant/qsymm.py -> build/lib.linux-x86_64-3.9/kwant
creating build/lib.linux-x86_64-3.9/kwant/physics
copying kwant/physics/symmetry.py -> build/lib.linux-x86_64-3.9/kwant/physics
copying kwant/physics/__init__.py -> build/lib.linux-x86_64-3.9/kwant/physics
copying kwant/physics/noise.py -> build/lib.linux-x86_64-3.9/kwant/physics
copying kwant/physics/leads.py -> build/lib.linux-x86_64-3.9/kwant/physics
copying kwant/physics/gauge.py -> build/lib.linux-x86_64-3.9/kwant/physics
copying kwant/physics/dispersion.py -> build/lib.linux-x86_64-3.9/kwant/physics
creating build/lib.linux-x86_64-3.9/kwant/continuum
copying kwant/continuum/__init__.py -> build/lib.linux-x86_64-3.9/kwant/continuum
copying kwant/continuum/_common.py -> build/lib.linux-x86_64-3.9/kwant/continuum
copying kwant/continuum/discretizer.py -> build/lib.linux-x86_64-3.9/kwant/continuum
creating build/lib.linux-x86_64-3.9/kwant/tests
copying kwant/tests/test_comprehensive.py -> build/lib.linux-x86_64-3.9/kwant/tests
copying kwant/tests/test_kpm.py -> build/lib.linux-x86_64-3.9/kwant/tests
copying kwant/tests/__init__.py -> build/lib.linux-x86_64-3.9/kwant/tests
copying kwant/tests/test_rmt.py -> build/lib.linux-x86_64-3.9/kwant/tests
copying kwant/tests/test_lattice.py -> build/lib.linux-x86_64-3.9/kwant/tests
copying kwant/tests/test_system.py -> build/lib.linux-x86_64-3.9/kwant/tests
copying kwant/tests/test_wraparound.py -> build/lib.linux-x86_64-3.9/kwant/tests
copying kwant/tests/test_operator.py -> build/lib.linux-x86_64-3.9/kwant/tests
copying kwant/tests/test_builder.py -> build/lib.linux-x86_64-3.9/kwant/tests
copying kwant/tests/test_plotter.py -> build/lib.linux-x86_64-3.9/kwant/tests
copying kwant/tests/test_qsymm.py -> build/lib.linux-x86_64-3.9/kwant/tests
creating build/lib.linux-x86_64-3.9/kwant/graph
copying kwant/graph/defs.py -> build/lib.linux-x86_64-3.9/kwant/graph
copying kwant/graph/__init__.py -> build/lib.linux-x86_64-3.9/kwant/graph
creating build/lib.linux-x86_64-3.9/kwant/solvers
copying kwant/solvers/sparse.py -> build/lib.linux-x86_64-3.9/kwant/solvers
copying kwant/solvers/__init__.py -> build/lib.linux-x86_64-3.9/kwant/solvers
copying kwant/solvers/common.py -> build/lib.linux-x86_64-3.9/kwant/solvers
copying kwant/solvers/default.py -> build/lib.linux-x86_64-3.9/kwant/solvers
copying kwant/solvers/mumps.py -> build/lib.linux-x86_64-3.9/kwant/solvers
creating build/lib.linux-x86_64-3.9/kwant/linalg
copying kwant/linalg/__init__.py -> build/lib.linux-x86_64-3.9/kwant/linalg
copying kwant/linalg/decomp_ev.py -> build/lib.linux-x86_64-3.9/kwant/linalg
copying kwant/linalg/fortran_helpers.py -> build/lib.linux-x86_64-3.9/kwant/linalg
copying kwant/linalg/decomp_schur.py -> build/lib.linux-x86_64-3.9/kwant/linalg
copying kwant/linalg/cmumps.py -> build/lib.linux-x86_64-3.9/kwant/linalg
copying kwant/linalg/decomp_lu.py -> build/lib.linux-x86_64-3.9/kwant/linalg
copying kwant/linalg/lll.py -> build/lib.linux-x86_64-3.9/kwant/linalg
copying kwant/linalg/mumps.py -> build/lib.linux-x86_64-3.9/kwant/linalg
creating build/lib.linux-x86_64-3.9/kwant/physics/tests
copying kwant/physics/tests/test_symmetry.py -> build/lib.linux-x86_64-3.9/kwant/physics/tests
copying kwant/physics/tests/__init__.py -> build/lib.linux-x86_64-3.9/kwant/physics/tests
copying kwant/physics/tests/test_noise.py -> build/lib.linux-x86_64-3.9/kwant/physics/tests
copying kwant/physics/tests/test_leads.py -> build/lib.linux-x86_64-3.9/kwant/physics/tests
copying kwant/physics/tests/test_dispersion.py -> build/lib.linux-x86_64-3.9/kwant/physics/tests
copying kwant/physics/tests/test_gauge.py -> build/lib.linux-x86_64-3.9/kwant/physics/tests
creating build/lib.linux-x86_64-3.9/kwant/continuum/tests
copying kwant/continuum/tests/__init__.py -> build/lib.linux-x86_64-3.9/kwant/continuum/tests
copying kwant/continuum/tests/test_discretizer.py -> build/lib.linux-x86_64-3.9/kwant/continuum/tests
copying kwant/continuum/tests/test_common.py -> build/lib.linux-x86_64-3.9/kwant/continuum/tests
creating build/lib.linux-x86_64-3.9/kwant/graph/tests
copying kwant/graph/tests/__init__.py -> build/lib.linux-x86_64-3.9/kwant/graph/tests
copying kwant/graph/tests/test_core.py -> build/lib.linux-x86_64-3.9/kwant/graph/tests
copying kwant/graph/tests/test_scotch.py -> build/lib.linux-x86_64-3.9/kwant/graph/tests
creating build/lib.linux-x86_64-3.9/kwant/solvers/tests
copying kwant/solvers/tests/__init__.py -> build/lib.linux-x86_64-3.9/kwant/solvers/tests
copying kwant/solvers/tests/test_sparse.py -> build/lib.linux-x86_64-3.9/kwant/solvers/tests
copying kwant/solvers/tests/test_mumps.py -> build/lib.linux-x86_64-3.9/kwant/solvers/tests
copying kwant/solvers/tests/_test_sparse.py -> build/lib.linux-x86_64-3.9/kwant/solvers/tests
creating build/lib.linux-x86_64-3.9/kwant/linalg/tests
copying kwant/linalg/tests/__init__.py -> build/lib.linux-x86_64-3.9/kwant/linalg/tests
copying kwant/linalg/tests/_test_utils.py -> build/lib.linux-x86_64-3.9/kwant/linalg/tests
copying kwant/linalg/tests/test_linalg.py -> build/lib.linux-x86_64-3.9/kwant/linalg/tests
copying kwant/linalg/tests/test_lll.py -> build/lib.linux-x86_64-3.9/kwant/linalg/tests
copying kwant/linalg/tests/test_mumps.py -> build/lib.linux-x86_64-3.9/kwant/linalg/tests
copying kwant/operator.pxd -> build/lib.linux-x86_64-3.9/kwant
copying kwant/graph/core.pxd -> build/lib.linux-x86_64-3.9/kwant/graph
copying kwant/graph/defs.pxd -> build/lib.linux-x86_64-3.9/kwant/graph
copying kwant/graph/c_scotch.pxd -> build/lib.linux-x86_64-3.9/kwant/graph
copying kwant/graph/defs.h -> build/lib.linux-x86_64-3.9/kwant/graph
copying kwant/linalg/cmumps.pxd -> build/lib.linux-x86_64-3.9/kwant/linalg
running build_ext
building 'kwant._system' extension
creating build/temp.linux-x86_64-3.9
creating build/temp.linux-x86_64-3.9/kwant
gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -Ikwant/graph -I/home/apollo/.pyenv/versions/3.9.9/envs/topocm_content/lib/python3.9/site-packages/numpy/core/include -I/home/apollo/.pyenv/versions/3.9.9/envs/topocm_content/include -I/home/apollo/.pyenv/versions/3.9.9/include/python3.9 -c kwant/_system.c -o build/temp.linux-x86_64-3.9/kwant/_system.o
In file included from /home/apollo/.pyenv/versions/3.9.9/envs/topocm_content/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1969,
from /home/apollo/.pyenv/versions/3.9.9/envs/topocm_content/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /home/apollo/.pyenv/versions/3.9.9/envs/topocm_content/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:4,
from kwant/_system.c:639:
/home/apollo/.pyenv/versions/3.9.9/envs/topocm_content/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
17 | #warning "Using deprecated NumPy API, disable it with " \
| ^~~~~~~
kwant/_system.c: In function ‘__Pyx_modinit_type_init_code’:
kwant/_system.c:29696:71: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’
29696 | __pyx_type_5kwant_7_system___pyx_scope_struct__hamiltonian_submatrix.tp_print = 0;
| ^
kwant/_system.c:29702:58: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’
29702 | __pyx_type_5kwant_7_system___pyx_scope_struct_1_genexpr.tp_print = 0;
| ^
kwant/_system.c:29708:58: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’
29708 | __pyx_type_5kwant_7_system___pyx_scope_struct_2_genexpr.tp_print = 0;
| ^
kwant/_system.c:29716:25: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’
29716 | __pyx_type___pyx_array.tp_print = 0;
| ^
kwant/_system.c:29721:31: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’
29721 | __pyx_type___pyx_MemviewEnum.tp_print = 0;
| ^
kwant/_system.c:29736:30: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’
29736 | __pyx_type___pyx_memoryview.tp_print = 0;
| ^
kwant/_system.c:29749:35: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’
29749 | __pyx_type___pyx_memoryviewslice.tp_print = 0;
| ^
kwant/_system.c: In function ‘__Pyx_ParseOptionalKeywords’:
kwant/_system.c:30619:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
30619 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
| ^
In file included from /home/apollo/.pyenv/versions/3.9.9/include/python3.9/unicodeobject.h:1026,
from /home/apollo/.pyenv/versions/3.9.9/include/python3.9/Python.h:93,
from kwant/_system.c:30:
/home/apollo/.pyenv/versions/3.9.9/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
kwant/_system.c:30619:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
30619 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
| ^
In file included from /home/apollo/.pyenv/versions/3.9.9/include/python3.9/unicodeobject.h:1026,
from /home/apollo/.pyenv/versions/3.9.9/include/python3.9/Python.h:93,
from kwant/_system.c:30:
/home/apollo/.pyenv/versions/3.9.9/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
| ^~~~~~~~~~~~~~~~~~~
kwant/_system.c:30619:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
30619 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
| ^
In file included from /home/apollo/.pyenv/versions/3.9.9/include/python3.9/unicodeobject.h:1026,
from /home/apollo/.pyenv/versions/3.9.9/include/python3.9/Python.h:93,
from kwant/_system.c:30:
/home/apollo/.pyenv/versions/3.9.9/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
kwant/_system.c:30619:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
30619 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
| ^
In file included from /home/apollo/.pyenv/versions/3.9.9/include/python3.9/unicodeobject.h:1026,
from /home/apollo/.pyenv/versions/3.9.9/include/python3.9/Python.h:93,
from kwant/_system.c:30:
/home/apollo/.pyenv/versions/3.9.9/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
kwant/_system.c:30619:21: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
30619 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
| ^
In file included from /home/apollo/.pyenv/versions/3.9.9/include/python3.9/unicodeobject.h:1026,
from /home/apollo/.pyenv/versions/3.9.9/include/python3.9/Python.h:93,
from kwant/_system.c:30:
/home/apollo/.pyenv/versions/3.9.9/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
| ^~~~~~~~~~~~~~~~~~~
kwant/_system.c:30619:21: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
30619 | (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
| ^
In file included from /home/apollo/.pyenv/versions/3.9.9/include/python3.9/unicodeobject.h:1026,
from /home/apollo/.pyenv/versions/3.9.9/include/python3.9/Python.h:93,
from kwant/_system.c:30:
/home/apollo/.pyenv/versions/3.9.9/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
kwant/_system.c:30635:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
30635 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
| ^
In file included from /home/apollo/.pyenv/versions/3.9.9/include/python3.9/unicodeobject.h:1026,
from /home/apollo/.pyenv/versions/3.9.9/include/python3.9/Python.h:93,
from kwant/_system.c:30:
/home/apollo/.pyenv/versions/3.9.9/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
kwant/_system.c:30635:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
30635 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
| ^
In file included from /home/apollo/.pyenv/versions/3.9.9/include/python3.9/unicodeobject.h:1026,
from /home/apollo/.pyenv/versions/3.9.9/include/python3.9/Python.h:93,
from kwant/_system.c:30:
/home/apollo/.pyenv/versions/3.9.9/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
| ^~~~~~~~~~~~~~~~~~~
kwant/_system.c:30635:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
30635 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
| ^
In file included from /home/apollo/.pyenv/versions/3.9.9/include/python3.9/unicodeobject.h:1026,
from /home/apollo/.pyenv/versions/3.9.9/include/python3.9/Python.h:93,
from kwant/_system.c:30:
/home/apollo/.pyenv/versions/3.9.9/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
kwant/_system.c:30635:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
30635 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
| ^
In file included from /home/apollo/.pyenv/versions/3.9.9/include/python3.9/unicodeobject.h:1026,
from /home/apollo/.pyenv/versions/3.9.9/include/python3.9/Python.h:93,
from kwant/_system.c:30:
/home/apollo/.pyenv/versions/3.9.9/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
kwant/_system.c:30635:25: warning: ‘PyUnicode_AsUnicode’ is deprecated [-Wdeprecated-declarations]
30635 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
| ^
In file included from /home/apollo/.pyenv/versions/3.9.9/include/python3.9/unicodeobject.h:1026,
from /home/apollo/.pyenv/versions/3.9.9/include/python3.9/Python.h:93,
from kwant/_system.c:30:
/home/apollo/.pyenv/versions/3.9.9/include/python3.9/cpython/unicodeobject.h:580:45: note: declared here
580 | Py_DEPRECATED(3.3) PyAPI_FUNC(Py_UNICODE *) PyUnicode_AsUnicode(
| ^~~~~~~~~~~~~~~~~~~
kwant/_system.c:30635:25: warning: ‘_PyUnicode_get_wstr_length’ is deprecated [-Wdeprecated-declarations]
30635 | (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
| ^
In file included from /home/apollo/.pyenv/versions/3.9.9/include/python3.9/unicodeobject.h:1026,
from /home/apollo/.pyenv/versions/3.9.9/include/python3.9/Python.h:93,
from kwant/_system.c:30:
/home/apollo/.pyenv/versions/3.9.9/include/python3.9/cpython/unicodeobject.h:446:26: note: declared here
446 | static inline Py_ssize_t _PyUnicode_get_wstr_length(PyObject *op) {
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
kwant/_system.c: In function ‘__Pyx_decode_c_string’:
kwant/_system.c:32354:9: warning: ‘PyUnicode_FromUnicode’ is deprecated [-Wdeprecated-declarations]
32354 | return PyUnicode_FromUnicode(NULL, 0);
| ^~~~~~
In file included from /home/apollo/.pyenv/versions/3.9.9/include/python3.9/unicodeobject.h:1026,
from /home/apollo/.pyenv/versions/3.9.9/include/python3.9/Python.h:93,
from kwant/_system.c:30:
/home/apollo/.pyenv/versions/3.9.9/include/python3.9/cpython/unicodeobject.h:551:42: note: declared here
551 | Py_DEPRECATED(3.3) PyAPI_FUNC(PyObject*) PyUnicode_FromUnicode(
| ^~~~~~~~~~~~~~~~~~~~~
************************************ Error ************************************
The compilation of Kwant has failed. Please examine the error message
above and consult the installation instructions in README.rst.
You might have to customize build.conf.
Build configuration was:
['No MUMPS support']
*******************************************************************************
error: command '/usr/bin/gcc' failed with exit code 1
----------------------------------------
ERROR: Command errored out with exit status 1: /home/apollo/.pyenv/versions/3.9.9/envs/topocm_content/bin/python3.9 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-g88pezou/kwant_a38bc6e2ba564bdcbba8cecb5189e3b9/setup.py'"'"'; __file__='"'"'/tmp/pip-install-g88pezou/kwant_a38bc6e2ba564bdcbba8cecb5189e3b9/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /tmp/pip-record-d0oj02ws/install-record.txt --single-version-externally-managed --compile --install-headers /home/apollo/.pyenv/versions/3.9.9/envs/topocm_content/include/site/python3.9/kwant Check the logs for full command output.
I'm not sure whether this problem is related to the one dicussed here. Any hints for fixing this problem will be highly appreciated. See here for relevant discussion.
Regards, HZ
Edited by hongyi-zhao