update environment and minimal-notebook base

science/Dockerfile

-FROM jupyter/minimal-notebook:8ccdfc1da8d5
+FROM jupyter/minimal-notebook:1145fb1198b2
 
 LABEL maintainer="Rafal Skolasinski <r.j.skolasinski@gmail.com>"
 
@@ -22,8 +22,8 @@ RUN jupyter nbextension enable --py widgetsnbextension --sys-prefix && \
     jupyter labextension install nbdime-jupyterlab && \
     jupyter labextension install @pyviz/jupyterlab_pyviz && \
     jupyter labextension install @jupyter-widgets/jupyterlab-manager@0.37 --no-build && \
-    jupyter labextension install plotlywidget@0.3.0  --no-build && \
-    jupyter labextension install @jupyterlab/plotly-extension@0.17  --no-build && \
+    jupyter labextension install plotlywidget@0.4.0  --no-build && \
+    jupyter labextension install @jupyterlab/plotly-extension@0.17.2  --no-build && \
     jupyter lab build
 
 # Fix permissions (required when following the base image)

science/environment.yml

@@ -7,43 +7,43 @@ dependencies:
 
   # main scientific packages
   - conda-forge::scipy=1.1.0
-  - conda-forge::numpy=1.15.1
+  - conda-forge::numpy=1.15.2
 
   - conda-forge::kwant=1.3.3
   - conda-forge::sympy=1.1.1
-  - conda-forge::adaptive=0.5.0
+  - conda-forge::adaptive=0.6.0
 
   # data analysis, visulation and serialisation
-  - conda-forge::matplotlib=2.2.3
-  - conda-forge::plotly=3.1.1
+  - conda-forge::matplotlib=3.0.0
+  - conda-forge::plotly=3.3.0
   - conda-forge::holoviews=1.10.7
-  - conda-forge::xarray=0.10.8
+  - conda-forge::xarray=0.10.9
   - conda-forge::pandas=0.23.4
   - conda-forge::deepdish=0.3.4
 
   # parallel computation
   - conda-forge::ipyparallel=6.2.2
-  - conda-forge::hpc05=v1.26
+  - conda-forge::hpc05=v1.29
 
   # kwant build depenendencies (required for kwant environment)
   - conda-forge::mumps=5.0.2
   - conda-forge::lapack=3.6.1
-  - conda-forge::cython=0.28.4
+  - conda-forge::cython=0.28.5
   - conda-forge::gcc=4.8.5
 
   # various packages that handle codes installed from sources
-  - conda-forge::pytest=3.7.4
-  - conda-forge::pytest-cov=2.5.1
+  - conda-forge::pytest=3.8.2
+  - conda-forge::pytest-cov=2.6.0
   - conda-forge::pytest-flakes=4.0.0
   - conda-forge::line_profiler=2.1.2
 
   # scikit packages
-  - conda-forge::scikit-learn=0.19.2
-  - conda-forge::scikit-image=0.14.0
+  - conda-forge::scikit-learn=0.20.0
+  - conda-forge::scikit-image=0.14.1
 
   # machine-learning packages
-  - conda-forge::keras=2.2.2
-  - conda-forge::tensorflow=1.10.0
+  - conda-forge::keras=2.2.4
+  - conda-forge::tensorflow=1.11.0
 
   # semicon
   - pip: