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replace `sys` with `syst` in the documentation and examples (closes #35)

Joseph Weston requested to merge jbweston/kwant:fixup/sys2syst into master

I targeted all identifiers called sys, so I applied the sed command

s/\([^A-Za-z0-9_]\|^\)sys\([^A-Za-z0-9_]\|$\)/\1syst\2/g

to every file in the repository under /doc and /examples, except

  • doc/Makefile
  • doc/source/conf.py
  • doc/source/images/_defs.py

where sys the system module appears, and is the only use of the sys identifier in those modules.

When I initially pushed these changes they broke the build, but this was fixed by changing the gitlab-ci.yml so that we clean everything before running the tests (this is the first commit)

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