run tests

Passed Started 10 months ago by
1Running with gitlab-runner 15.4.0 (43b2dc3d)
2  on universal-tn4 d3cf9985
 3  Preparing the "docker" executor  
  00:13
4Using Docker executor with image mambaorg/micromamba:1.4.3 ...
5Authenticating with credentials from /root/.docker/config.json
6Pulling docker image mambaorg/micromamba:1.4.3 ...
7Using docker image sha256:bcfdda4930c6becbd40d3a8eb6d835e4d2275d16767fdd5000a25507d1c56b02 for mambaorg/micromamba:1.4.3 with digest mambaorg/micromamba@sha256:25b00e28c39abc2e698943c2279fa865d0ec7c97891c7faecafb5c6417313e71 ...
 8  Preparing environment  
  00:06
9Running on runner-d3cf9985-project-3642-concurrent-0 via tnw-tn4.tudelft.net...
 10  Getting source from Git repository  
  00:20
11Fetching changes with git depth set to 20...
12Reinitialized existing Git repository in /builds/qt/kwant-scf/.git/
13Checking out 91cced24 as examples...
14Removing .coverage
15Removing .pytest_cache/
16Removing .ruff_cache/
17Removing coverage.xml
18Removing htmlcov/
19Removing junit.xml
20Removing micromamba/
21Removing pymf/_version.py
22Removing pymf/tests/__pycache__/
23Skipping Git submodules setup
 24  Executing "step_script" stage of the job script  
  03:00
25Using docker image sha256:bcfdda4930c6becbd40d3a8eb6d835e4d2275d16767fdd5000a25507d1c56b02 for mambaorg/micromamba:1.4.3 with digest mambaorg/micromamba@sha256:25b00e28c39abc2e698943c2279fa865d0ec7c97891c7faecafb5c6417313e71 ...
26$ mkdir -p micromamba
27$ export MAMBA_ROOT_PREFIX=micromamba
28$ micromamba create -yf docs/environment.yml
29                                           __
30          __  ______ ___  ____ _____ ___  / /_  ____ _
31         / / / / __ `__ \/ __ `/ __ `__ \/ __ \/ __ `/
32        / /_/ / / / / / / /_/ / / / / / / /_/ / /_/ /
33       / .___/_/ /_/ /_/\__,_/_/ /_/ /_/_.___/\__,_/
34      /_/
35Transaction
36  Prefix: /builds/qt/kwant-scf/micromamba/envs/pymf-docs
37  Updating specs:
38   - python=3.11
39   - kwant
40   - myst-nb
41   - numpy
42   - scipy
43   - matplotlib-base
44   - sphinx-togglebutton
45   - sphinx-copybutton
46   - pip
47   - git
48   - make
49  Package                               Version  Build                    Channel          Size
50─────────────────────────────────────────────────────────────────────────────────────────────────
51  Install:
52─────────────────────────────────────────────────────────────────────────────────────────────────
53  + _libgcc_mutex                           0.1  conda_forge              conda-forge       3kB
54  + _openmp_mutex                           4.5  2_gnu                    conda-forge      24kB
55  + alabaster                            0.7.16  pyhd8ed1ab_0             conda-forge      18kB
56  + asttokens                             2.4.1  pyhd8ed1ab_0             conda-forge      29kB
57  + attrs                                23.2.0  pyh71513ae_0             conda-forge      55kB
58  + babel                                2.14.0  pyhd8ed1ab_0             conda-forge       8MB
59  + brotli                                1.1.0  hd590300_1               conda-forge      19kB
60  + brotli-bin                            1.1.0  hd590300_1               conda-forge      19kB
61  + brotli-python                         1.1.0  py311hb755f60_1          conda-forge     351kB
62  + bzip2                                 1.0.8  hd590300_5               conda-forge     254kB
63  + c-ares                               1.28.1  hd590300_0               conda-forge     169kB
64  + ca-certificates                    2024.2.2  hbcca054_0               conda-forge     155kB
65  + certifi                            2024.2.2  pyhd8ed1ab_0             conda-forge     161kB
66  + charset-normalizer                    3.3.2  pyhd8ed1ab_0             conda-forge      47kB
67  + click                                 8.1.7  unix_pyh707e725_0        conda-forge      84kB
68  + colorama                              0.4.6  pyhd8ed1ab_0             conda-forge      25kB
69  + comm                                  0.2.2  pyhd8ed1ab_0             conda-forge      12kB
70  + contourpy                             1.2.1  py311h9547e67_0          conda-forge     259kB
71  + cycler                               0.12.1  pyhd8ed1ab_0             conda-forge      13kB
72  + debugpy                               1.8.1  py311hb755f60_0          conda-forge       2MB
73  + decorator                             5.1.1  pyhd8ed1ab_0             conda-forge      12kB
74  + docutils                             0.21.2  pyhd8ed1ab_0             conda-forge     403kB
75  + exceptiongroup                        1.2.0  pyhd8ed1ab_2             conda-forge      21kB
76  + executing                             2.0.1  pyhd8ed1ab_0             conda-forge      28kB
77  + fonttools                            4.51.0  py311h459d7ec_0          conda-forge       3MB
78  + freetype                             2.12.1  h267a509_2               conda-forge     635kB
79  + git                                  2.45.0  pl5321hef9f9f3_1         conda-forge      11MB
80  + gmp                                   6.3.0  h59595ed_1               conda-forge     570kB
81  + gmpy2                                 2.1.5  py311he48d604_0          conda-forge     203kB
82  + greenlet                              3.0.3  py311hb755f60_0          conda-forge     236kB
83  + idna                                    3.7  pyhd8ed1ab_0             conda-forge      53kB
84  + imagesize                             1.4.1  pyhd8ed1ab_0             conda-forge      10kB
85  + importlib-metadata                    7.1.0  pyha770c72_0             conda-forge      27kB
86  + importlib_metadata                    7.1.0  hd8ed1ab_0               conda-forge       9kB
87  + importlib_resources                   6.4.0  pyhd8ed1ab_0             conda-forge      33kB
88  + iniconfig                             2.0.0  pyhd8ed1ab_0             conda-forge      11kB
89  + ipykernel                            6.29.3  pyhd33586a_0             conda-forge     119kB
90  + ipython                              8.22.2  pyh707e725_0             conda-forge     594kB
91  + jedi                                 0.19.1  pyhd8ed1ab_0             conda-forge     841kB
92  + jinja2                                3.1.3  pyhd8ed1ab_0             conda-forge     112kB
93  + jsonschema                           4.22.0  pyhd8ed1ab_0             conda-forge      74kB
94  + jsonschema-specifications         2023.12.1  pyhd8ed1ab_0             conda-forge      16kB
95  + jupyter-cache                         1.0.0  pyhd8ed1ab_0             conda-forge      31kB
96  + jupyter_client                        8.6.1  pyhd8ed1ab_0             conda-forge     106kB
97  + jupyter_core                          5.7.2  py311h38be061_0          conda-forge      95kB
98  + keyutils                              1.6.1  h166bdaf_0               conda-forge     118kB
99  + kiwisolver                            1.4.5  py311h9547e67_1          conda-forge      73kB
100  + krb5                                 1.21.2  h659d440_0               conda-forge       1MB
101  + kwant                                 1.4.4  nompi_py311hfed7191_102  conda-forge       1MB
102  + lcms2                                  2.16  hb7c19ff_0               conda-forge     245kB
103  + ld_impl_linux-64                       2.40  h55db66e_0               conda-forge     713kB
104  + lerc                                  4.0.0  h27087fc_0               conda-forge     282kB
105  + libblas                               3.9.0  22_linux64_openblas      conda-forge      15kB
106  + libbrotlicommon                       1.1.0  hd590300_1               conda-forge      69kB
107  + libbrotlidec                          1.1.0  hd590300_1               conda-forge      33kB
108  + libbrotlienc                          1.1.0  hd590300_1               conda-forge     283kB
109  + libcblas                              3.9.0  22_linux64_openblas      conda-forge      14kB
110  + libcurl                               8.7.1  hca28451_0               conda-forge     398kB
111  + libdeflate                             1.20  hd590300_0               conda-forge      72kB
112  + libedit                        3.1.20191231  he28a2e2_2               conda-forge     124kB
113  + libev                                  4.33  hd590300_2               conda-forge     113kB
114  + libexpat                              2.6.2  h59595ed_0               conda-forge      74kB
115  + libffi                                3.4.2  h7f98852_5               conda-forge      58kB
116  + libgcc-ng                            13.2.0  h77fa898_6               conda-forge     778kB
117  + libgfortran-ng                       13.2.0  h69a702a_6               conda-forge      24kB
118  + libgfortran5                         13.2.0  h43f5ff8_6               conda-forge       1MB
119  + libgomp                              13.2.0  h77fa898_6               conda-forge     420kB
120  + libiconv                               1.17  hd590300_2               conda-forge     706kB
121  + libjpeg-turbo                         3.0.0  hd590300_1               conda-forge     619kB
122  + liblapack                             3.9.0  22_linux64_openblas      conda-forge      14kB
123  + libnghttp2                           1.58.0  h47da74e_1               conda-forge     632kB
124  + libnsl                                2.0.1  hd590300_0               conda-forge      33kB
125  + libopenblas                          0.3.27  pthreads_h413a1c8_0      conda-forge       6MB
126  + libpng                               1.6.43  h2797004_0               conda-forge     288kB
127  + libscotch                             7.0.4  h91e35bf_1               conda-forge     340kB
128  + libsodium                            1.0.18  h36c2ea0_1               conda-forge     375kB
129  + libsqlite                            3.45.3  h2797004_0               conda-forge     860kB
130  + libssh2                              1.11.0  h0841786_0               conda-forge     271kB
131  + libstdcxx-ng                         13.2.0  hc0a3c3a_6               conda-forge       4MB
132  + libtiff                               4.6.0  h1dd3fc0_3               conda-forge     283kB
133  + libuuid                              2.38.1  h0b41bf4_0               conda-forge      34kB
134  + libwebp-base                          1.4.0  hd590300_0               conda-forge     439kB
135  + libxcb                                 1.15  h0b41bf4_0               conda-forge     384kB
136  + libxcrypt                            4.4.36  hd590300_1               conda-forge     100kB
137  + libzlib                              1.2.13  hd590300_5               conda-forge      62kB
138  + make                                    4.3  hd18ef5c_1               conda-forge     519kB
139  + markdown-it-py                        3.0.0  pyhd8ed1ab_0             conda-forge      64kB
140  + markupsafe                            2.1.5  py311h459d7ec_0          conda-forge      28kB
141  + matplotlib-base                       3.8.4  py311h54ef318_0          conda-forge       8MB
142  + matplotlib-inline                     0.1.7  pyhd8ed1ab_0             conda-forge      15kB
143  + mdit-py-plugins                       0.4.0  pyhd8ed1ab_0             conda-forge      41kB
144  + mdurl                                 0.1.2  pyhd8ed1ab_0             conda-forge      15kB
145  + metis                                 5.1.0  h59595ed_1007            conda-forge       4MB
146  + mpc                                   1.3.1  hfe3b2da_0               conda-forge     116kB
147  + mpfr                                  4.2.1  h9458935_1               conda-forge     643kB
148  + mpmath                                1.3.0  pyhd8ed1ab_0             conda-forge     438kB
149  + mumps-include                         5.6.2  ha770c72_4               conda-forge      27kB
150  + mumps-seq                             5.6.2  hfef103a_4               conda-forge       2MB
151  + munkres                               1.1.4  pyh9f0ad1d_0             conda-forge      12kB
152  + myst-nb                               1.1.0  pyhd8ed1ab_0             conda-forge      63kB
153  + myst-parser                           3.0.1  pyhd8ed1ab_0             conda-forge      72kB
154  + nbclient                             0.10.0  pyhd8ed1ab_0             conda-forge      28kB
155  + nbformat                             5.10.4  pyhd8ed1ab_0             conda-forge     101kB
156  + ncurses                        6.4.20240210  h59595ed_0               conda-forge     896kB
157  + nest-asyncio                          1.6.0  pyhd8ed1ab_0             conda-forge      12kB
158  + numpy                                1.26.4  py311h64a7726_0          conda-forge       8MB
159  + openjpeg                              2.5.2  h488ebb8_0               conda-forge     342kB
160  + openssl                               3.3.0  hd590300_0               conda-forge       3MB
161  + packaging                              24.0  pyhd8ed1ab_0             conda-forge      50kB
162  + parso                                 0.8.4  pyhd8ed1ab_0             conda-forge      75kB
163  + pcre2                                 10.43  hcad00b1_0               conda-forge     951kB
164  + perl                                 5.32.1  7_hd590300_perl5         conda-forge      13MB
165  + pexpect                               4.9.0  pyhd8ed1ab_0             conda-forge      54kB
166  + pickleshare                           0.7.5  py_1003                  conda-forge       9kB
167  + pillow                               10.3.0  py311h18e6fac_0          conda-forge      43MB
168  + pip                                    24.0  pyhd8ed1ab_0             conda-forge       1MB
169  + pkgutil-resolve-name                 1.3.10  pyhd8ed1ab_1             conda-forge      11kB
170  + platformdirs                          4.2.1  pyhd8ed1ab_0             conda-forge      20kB
171  + pluggy                                1.5.0  pyhd8ed1ab_0             conda-forge      24kB
172  + prompt-toolkit                       3.0.42  pyha770c72_0             conda-forge     270kB
173  + psutil                                5.9.8  py311h459d7ec_0          conda-forge     506kB
174  + pthread-stubs                           0.4  h36c2ea0_1001            conda-forge       6kB
175  + ptyprocess                            0.7.0  pyhd3deb0d_0             conda-forge      17kB
176  + pure_eval                             0.2.2  pyhd8ed1ab_0             conda-forge      15kB
177  + pygments                             2.17.2  pyhd8ed1ab_0             conda-forge     860kB
178  + pyparsing                             3.1.2  pyhd8ed1ab_0             conda-forge      89kB
179  + pysocks                               1.7.1  pyha2e5f31_6             conda-forge      19kB
180  + pytest                                8.2.0  pyhd8ed1ab_0             conda-forge     257kB
181  + python                               3.11.9  hb806964_0_cpython       conda-forge      31MB
182  + python-dateutil                       2.9.0  pyhd8ed1ab_0             conda-forge     223kB
183  + python-fastjsonschema                2.19.1  pyhd8ed1ab_0             conda-forge     225kB
184  + python_abi                             3.11  4_cp311                  conda-forge       6kB
185  + pytz                                 2024.1  pyhd8ed1ab_0             conda-forge     189kB
186  + pyyaml                                6.0.1  py311h459d7ec_1          conda-forge     201kB
187  + pyzmq                                26.0.2  py311h08a0b41_0          conda-forge     474kB
188  + qsymm                                 1.4.0  pyhd8ed1ab_0             conda-forge      71kB
189  + readline                                8.2  h8228510_1               conda-forge     281kB
190  + referencing                          0.35.1  pyhd8ed1ab_0             conda-forge      42kB
191  + requests                             2.31.0  pyhd8ed1ab_0             conda-forge      57kB
192  + rpds-py                              0.18.0  py311h46250e7_0          conda-forge     916kB
193  + scipy                                1.13.0  py311h64a7726_0          conda-forge      17MB
194  + scotch                                7.0.4  h23d43cc_1               conda-forge      92kB
195  + setuptools                           69.5.1  pyhd8ed1ab_0             conda-forge     502kB
196  + six                                  1.16.0  pyh6c4a22f_0             conda-forge      14kB
197  + snowballstemmer                       2.2.0  pyhd8ed1ab_0             conda-forge      59kB
198  + sphinx                                7.3.7  pyhd8ed1ab_0             conda-forge       1MB
199  + sphinx-copybutton                     0.5.2  pyhd8ed1ab_0             conda-forge      18kB
200  + sphinx-togglebutton                   0.3.2  pyhd8ed1ab_0             conda-forge      12kB
201  + sphinxcontrib-applehelp               1.0.8  pyhd8ed1ab_0             conda-forge      30kB
202  + sphinxcontrib-devhelp                 1.0.6  pyhd8ed1ab_0             conda-forge      24kB
203  + sphinxcontrib-htmlhelp                2.0.5  pyhd8ed1ab_0             conda-forge      33kB
204  + sphinxcontrib-jsmath                  1.0.1  pyhd8ed1ab_0             conda-forge      10kB
205  + sphinxcontrib-qthelp                  1.0.7  pyhd8ed1ab_0             conda-forge      27kB
206  + sphinxcontrib-serializinghtml        1.1.10  pyhd8ed1ab_0             conda-forge      29kB
207  + sqlalchemy                           2.0.29  py311h459d7ec_0          conda-forge       4MB
208  + stack_data                            0.6.2  pyhd8ed1ab_0             conda-forge      26kB
209  + sympy                                  1.12  pypyh9d50eac_103         conda-forge       4MB
210  + tabulate                              0.9.0  pyhd8ed1ab_1             conda-forge      36kB
211  + tinyarray                             1.2.4  py311h320fe9a_3          conda-forge      61kB
212  + tk                                   8.6.13  noxft_h4845f30_101       conda-forge       3MB
213  + tomli                                 2.0.1  pyhd8ed1ab_0             conda-forge      16kB
214  + tornado                                 6.4  py311h459d7ec_0          conda-forge     853kB
215  + traitlets                            5.14.3  pyhd8ed1ab_0             conda-forge     110kB
216  + typing-extensions                    4.11.0  hd8ed1ab_0               conda-forge      10kB
217  + typing_extensions                    4.11.0  pyha770c72_0             conda-forge      38kB
218  + tzdata                                2024a  h0c530f3_0               conda-forge     120kB
219  + urllib3                               2.2.1  pyhd8ed1ab_0             conda-forge      95kB
220  + wcwidth                              0.2.13  pyhd8ed1ab_0             conda-forge      33kB
221  + wheel                                0.43.0  pyhd8ed1ab_1             conda-forge      58kB
222  + xorg-libxau                          1.0.11  hd590300_0               conda-forge      14kB
223  + xorg-libxdmcp                         1.1.3  h7f98852_0               conda-forge      19kB
224  + xz                                    5.2.6  h166bdaf_0               conda-forge     418kB
225  + yaml                                  0.2.5  h7f98852_2               conda-forge      89kB
226  + zeromq                                4.3.5  h75354e8_3               conda-forge     352kB
227  + zipp                                 3.17.0  pyhd8ed1ab_0             conda-forge      19kB
228  + zlib                                 1.2.13  hd590300_5               conda-forge      93kB
229  + zstd                                  1.5.5  hfc55251_0               conda-forge     545kB
230  Summary:
231  Install: 177 packages
232  Total download: 208MB
233─────────────────────────────────────────────────────────────────────────────────────────────────
234Transaction starting
235Linking python_abi-3.11-4_cp311
236Linking ca-certificates-2024.2.2-hbcca054_0
237Linking mumps-include-5.6.2-ha770c72_4
238Linking _libgcc_mutex-0.1-conda_forge
239Linking libstdcxx-ng-13.2.0-hc0a3c3a_6
240Linking ld_impl_linux-64-2.40-h55db66e_0
241Linking libgomp-13.2.0-h77fa898_6
242Linking _openmp_mutex-4.5-2_gnu
243Linking libgcc-ng-13.2.0-h77fa898_6
244Linking xorg-libxdmcp-1.1.3-h7f98852_0
245Linking pthread-stubs-0.4-h36c2ea0_1001
246Linking libsodium-1.0.18-h36c2ea0_1
247Linking c-ares-1.28.1-hd590300_0
248Linking libev-4.33-hd590300_2
249Linking gmp-6.3.0-h59595ed_1
250Linking metis-5.1.0-h59595ed_1007
251Linking libwebp-base-1.4.0-hd590300_0
252Linking libbrotlicommon-1.1.0-hd590300_1
253Linking libiconv-1.17-hd590300_2
254Linking libdeflate-1.20-hd590300_0
255Linking lerc-4.0.0-h27087fc_0
256Linking libjpeg-turbo-3.0.0-hd590300_1
257Linking xorg-libxau-1.0.11-hd590300_0
258Linking libxcrypt-4.4.36-hd590300_1
259Linking libffi-3.4.2-h7f98852_5
260Linking bzip2-1.0.8-hd590300_5
261Linking yaml-0.2.5-h7f98852_2
262Linking libgfortran5-13.2.0-h43f5ff8_6
263Linking libzlib-1.2.13-hd590300_5
264Linking make-4.3-hd18ef5c_1
265Linking keyutils-1.6.1-h166bdaf_0
266Linking openssl-3.3.0-hd590300_0
267Linking ncurses-6.4.20240210-h59595ed_0
268Linking libuuid-2.38.1-h0b41bf4_0
269Linking libnsl-2.0.1-hd590300_0
270Linking libexpat-2.6.2-h59595ed_0
271Linking xz-5.2.6-h166bdaf_0
272Linking mpfr-4.2.1-h9458935_1
273Linking libbrotlienc-1.1.0-hd590300_1
274Linking libbrotlidec-1.1.0-hd590300_1
275Linking libxcb-1.15-h0b41bf4_0
276Linking perl-5.32.1-7_hd590300_perl5
277Linking libgfortran-ng-13.2.0-h69a702a_6
278Linking zlib-1.2.13-hd590300_5
279Linking libpng-1.6.43-h2797004_0
280Linking tk-8.6.13-noxft_h4845f30_101
281Linking zstd-1.5.5-hfc55251_0
282Linking pcre2-10.43-hcad00b1_0
283Linking libsqlite-3.45.3-h2797004_0
284Linking libnghttp2-1.58.0-h47da74e_1
285Linking libssh2-1.11.0-h0841786_0
286Linking libedit-3.1.20191231-he28a2e2_2
287Linking readline-8.2-h8228510_1
288Linking mpc-1.3.1-hfe3b2da_0
289Linking brotli-bin-1.1.0-hd590300_1
290Linking libopenblas-0.3.27-pthreads_h413a1c8_0
291Linking libscotch-7.0.4-h91e35bf_1
292Linking freetype-2.12.1-h267a509_2
293Linking libtiff-4.6.0-h1dd3fc0_3
294Linking krb5-1.21.2-h659d440_0
295Linking brotli-1.1.0-hd590300_1
296Linking libblas-3.9.0-22_linux64_openblas
297Linking scotch-7.0.4-h23d43cc_1
298Linking openjpeg-2.5.2-h488ebb8_0
299Linking lcms2-2.16-hb7c19ff_0
300Linking zeromq-4.3.5-h75354e8_3
301Linking libcurl-8.7.1-hca28451_0
302Linking libcblas-3.9.0-22_linux64_openblas
303Linking liblapack-3.9.0-22_linux64_openblas
304Linking git-2.45.0-pl5321hef9f9f3_1
305Linking mumps-seq-5.6.2-hfef103a_4
306Linking tzdata-2024a-h0c530f3_0
307Linking python-3.11.9-hb806964_0_cpython
308Linking wheel-0.43.0-pyhd8ed1ab_1
309Linking setuptools-69.5.1-pyhd8ed1ab_0
310Linking pip-24.0-pyhd8ed1ab_0
311Linking sphinxcontrib-jsmath-1.0.1-pyhd8ed1ab_0
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404Linking jupyter-cache-1.0.0-pyhd8ed1ab_0
405Linking sphinxcontrib-qthelp-1.0.7-pyhd8ed1ab_0
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407Linking myst-parser-3.0.1-pyhd8ed1ab_0
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410Linking myst-nb-1.1.0-pyhd8ed1ab_0
411Linking kwant-1.4.4-nompi_py311hfed7191_102
412Transaction finished
413To activate this environment, use:
414    micromamba activate pymf-docs
415Or to execute a single command in this environment, use:
416    micromamba run -n pymf-docs mycommand
417Installing pip packages: sphinx-book-theme>=1.1.0, sphinx-tippy, ..
418Processing /builds/qt/kwant-scf
419  Installing build dependencies: started
420  Installing build dependencies: finished with status 'done'
421  Getting requirements to build wheel: started
422  Getting requirements to build wheel: finished with status 'done'
423  Preparing metadata (pyproject.toml): started
424  Preparing metadata (pyproject.toml): finished with status 'done'
425Collecting sphinx-book-theme>=1.1.0 (from -r /builds/qt/kwant-scf/docs/mambafzS6KIiWouL (line 1))
426  Downloading sphinx_book_theme-1.1.2-py3-none-any.whl.metadata (5.7 kB)
427Collecting sphinx-tippy (from -r /builds/qt/kwant-scf/docs/mambafzS6KIiWouL (line 2))
428  Downloading sphinx_tippy-0.4.3-py3-none-any.whl.metadata (1.2 kB)
429Requirement already satisfied: sphinx>=5 in /builds/qt/kwant-scf/micromamba/envs/pymf-docs/lib/python3.11/site-packages (from sphinx-book-theme>=1.1.0->-r /builds/qt/kwant-scf/docs/mambafzS6KIiWouL (line 1)) (7.3.7)
430Collecting pydata-sphinx-theme>=0.14 (from sphinx-book-theme>=1.1.0->-r /builds/qt/kwant-scf/docs/mambafzS6KIiWouL (line 1))
431  Downloading pydata_sphinx_theme-0.15.2-py3-none-any.whl.metadata (7.3 kB)
432Collecting beautifulsoup4 (from sphinx-tippy->-r /builds/qt/kwant-scf/docs/mambafzS6KIiWouL (line 2))
433  Downloading beautifulsoup4-4.12.3-py3-none-any.whl.metadata (3.8 kB)
434Requirement already satisfied: jinja2 in /builds/qt/kwant-scf/micromamba/envs/pymf-docs/lib/python3.11/site-packages (from sphinx-tippy->-r /builds/qt/kwant-scf/docs/mambafzS6KIiWouL (line 2)) (3.1.3)
435Requirement already satisfied: requests in /builds/qt/kwant-scf/micromamba/envs/pymf-docs/lib/python3.11/site-packages (from sphinx-tippy->-r /builds/qt/kwant-scf/docs/mambafzS6KIiWouL (line 2)) (2.31.0)
436Requirement already satisfied: numpy>=1.23 in /builds/qt/kwant-scf/micromamba/envs/pymf-docs/lib/python3.11/site-packages (from pymf==0.1.dev68+g91cced2->-r /builds/qt/kwant-scf/docs/mambafzS6KIiWouL (line 3)) (1.26.4)
437Requirement already satisfied: packaging>=22.0 in /builds/qt/kwant-scf/micromamba/envs/pymf-docs/lib/python3.11/site-packages (from pymf==0.1.dev68+g91cced2->-r /builds/qt/kwant-scf/docs/mambafzS6KIiWouL (line 3)) (24.0)
438Requirement already satisfied: scipy>=1.8 in /builds/qt/kwant-scf/micromamba/envs/pymf-docs/lib/python3.11/site-packages (from pymf==0.1.dev68+g91cced2->-r /builds/qt/kwant-scf/docs/mambafzS6KIiWouL (line 3)) (1.13.0)
439Requirement already satisfied: docutils!=0.17.0 in /builds/qt/kwant-scf/micromamba/envs/pymf-docs/lib/python3.11/site-packages (from pydata-sphinx-theme>=0.14->sphinx-book-theme>=1.1.0->-r /builds/qt/kwant-scf/docs/mambafzS6KIiWouL (line 1)) (0.21.2)
440Requirement already satisfied: Babel in /builds/qt/kwant-scf/micromamba/envs/pymf-docs/lib/python3.11/site-packages (from pydata-sphinx-theme>=0.14->sphinx-book-theme>=1.1.0->-r /builds/qt/kwant-scf/docs/mambafzS6KIiWouL (line 1)) (2.14.0)
441Requirement already satisfied: pygments>=2.7 in /builds/qt/kwant-scf/micromamba/envs/pymf-docs/lib/python3.11/site-packages (from pydata-sphinx-theme>=0.14->sphinx-book-theme>=1.1.0->-r /builds/qt/kwant-scf/docs/mambafzS6KIiWouL (line 1)) (2.17.2)
442Collecting accessible-pygments (from pydata-sphinx-theme>=0.14->sphinx-book-theme>=1.1.0->-r /builds/qt/kwant-scf/docs/mambafzS6KIiWouL (line 1))
443  Downloading accessible_pygments-0.0.4-py2.py3-none-any.whl.metadata (6.0 kB)
444Requirement already satisfied: typing-extensions in /builds/qt/kwant-scf/micromamba/envs/pymf-docs/lib/python3.11/site-packages (from pydata-sphinx-theme>=0.14->sphinx-book-theme>=1.1.0->-r /builds/qt/kwant-scf/docs/mambafzS6KIiWouL (line 1)) (4.11.0)
445Requirement already satisfied: sphinxcontrib-applehelp in /builds/qt/kwant-scf/micromamba/envs/pymf-docs/lib/python3.11/site-packages (from sphinx>=5->sphinx-book-theme>=1.1.0->-r /builds/qt/kwant-scf/docs/mambafzS6KIiWouL (line 1)) (1.0.8)
446Requirement already satisfied: sphinxcontrib-devhelp in /builds/qt/kwant-scf/micromamba/envs/pymf-docs/lib/python3.11/site-packages (from sphinx>=5->sphinx-book-theme>=1.1.0->-r /builds/qt/kwant-scf/docs/mambafzS6KIiWouL (line 1)) (1.0.6)
447Requirement already satisfied: sphinxcontrib-jsmath in /builds/qt/kwant-scf/micromamba/envs/pymf-docs/lib/python3.11/site-packages (from sphinx>=5->sphinx-book-theme>=1.1.0->-r /builds/qt/kwant-scf/docs/mambafzS6KIiWouL (line 1)) (1.0.1)
448Requirement already satisfied: sphinxcontrib-htmlhelp>=2.0.0 in /builds/qt/kwant-scf/micromamba/envs/pymf-docs/lib/python3.11/site-packages (from sphinx>=5->sphinx-book-theme>=1.1.0->-r /builds/qt/kwant-scf/docs/mambafzS6KIiWouL (line 1)) (2.0.5)
449Requirement already satisfied: sphinxcontrib-serializinghtml>=1.1.9 in /builds/qt/kwant-scf/micromamba/envs/pymf-docs/lib/python3.11/site-packages (from sphinx>=5->sphinx-book-theme>=1.1.0->-r /builds/qt/kwant-scf/docs/mambafzS6KIiWouL (line 1)) (1.1.10)
450Requirement already satisfied: sphinxcontrib-qthelp in /builds/qt/kwant-scf/micromamba/envs/pymf-docs/lib/python3.11/site-packages (from sphinx>=5->sphinx-book-theme>=1.1.0->-r /builds/qt/kwant-scf/docs/mambafzS6KIiWouL (line 1)) (1.0.7)
451Requirement already satisfied: snowballstemmer>=2.0 in /builds/qt/kwant-scf/micromamba/envs/pymf-docs/lib/python3.11/site-packages (from sphinx>=5->sphinx-book-theme>=1.1.0->-r /builds/qt/kwant-scf/docs/mambafzS6KIiWouL (line 1)) (2.2.0)
452Requirement already satisfied: alabaster~=0.7.14 in /builds/qt/kwant-scf/micromamba/envs/pymf-docs/lib/python3.11/site-packages (from sphinx>=5->sphinx-book-theme>=1.1.0->-r /builds/qt/kwant-scf/docs/mambafzS6KIiWouL (line 1)) (0.7.16)
453Requirement already satisfied: imagesize>=1.3 in /builds/qt/kwant-scf/micromamba/envs/pymf-docs/lib/python3.11/site-packages (from sphinx>=5->sphinx-book-theme>=1.1.0->-r /builds/qt/kwant-scf/docs/mambafzS6KIiWouL (line 1)) (1.4.1)
454Requirement already satisfied: MarkupSafe>=2.0 in /builds/qt/kwant-scf/micromamba/envs/pymf-docs/lib/python3.11/site-packages (from jinja2->sphinx-tippy->-r /builds/qt/kwant-scf/docs/mambafzS6KIiWouL (line 2)) (2.1.5)
455Requirement already satisfied: charset-normalizer<4,>=2 in /builds/qt/kwant-scf/micromamba/envs/pymf-docs/lib/python3.11/site-packages (from requests->sphinx-tippy->-r /builds/qt/kwant-scf/docs/mambafzS6KIiWouL (line 2)) (3.3.2)
456Requirement already satisfied: idna<4,>=2.5 in /builds/qt/kwant-scf/micromamba/envs/pymf-docs/lib/python3.11/site-packages (from requests->sphinx-tippy->-r /builds/qt/kwant-scf/docs/mambafzS6KIiWouL (line 2)) (3.7)
457Requirement already satisfied: urllib3<3,>=1.21.1 in /builds/qt/kwant-scf/micromamba/envs/pymf-docs/lib/python3.11/site-packages (from requests->sphinx-tippy->-r /builds/qt/kwant-scf/docs/mambafzS6KIiWouL (line 2)) (2.2.1)
458Requirement already satisfied: certifi>=2017.4.17 in /builds/qt/kwant-scf/micromamba/envs/pymf-docs/lib/python3.11/site-packages (from requests->sphinx-tippy->-r /builds/qt/kwant-scf/docs/mambafzS6KIiWouL (line 2)) (2024.2.2)
459Collecting soupsieve>1.2 (from beautifulsoup4->sphinx-tippy->-r /builds/qt/kwant-scf/docs/mambafzS6KIiWouL (line 2))
460  Downloading soupsieve-2.5-py3-none-any.whl.metadata (4.7 kB)
461Downloading sphinx_book_theme-1.1.2-py3-none-any.whl (400 kB)
462   ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 400.8/400.8 kB 7.8 MB/s eta 0:00:00
463Downloading sphinx_tippy-0.4.3-py3-none-any.whl (10.0 kB)
464Downloading pydata_sphinx_theme-0.15.2-py3-none-any.whl (4.5 MB)
465   ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 4.5/4.5 MB 52.9 MB/s eta 0:00:00
466Downloading beautifulsoup4-4.12.3-py3-none-any.whl (147 kB)
467   ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 147.9/147.9 kB 3.0 MB/s eta 0:00:00
468Downloading soupsieve-2.5-py3-none-any.whl (36 kB)
469Downloading accessible_pygments-0.0.4-py2.py3-none-any.whl (29 kB)
470Building wheels for collected packages: pymf
471  Building wheel for pymf (pyproject.toml): started
472  Building wheel for pymf (pyproject.toml): finished with status 'done'
473  Created wheel for pymf: filename=pymf-0.1.dev68+g91cced2-py3-none-any.whl size=17187 sha256=ec9856fcf638bbe02969afdee986a09f62b6684a9a0bce373e0efe3ac2415602
474  Stored in directory: /home/mambauser/.cache/pip/wheels/5b/06/10/8869722029570f6f33627b817da751714f487bfb77cdb04f2f
475Successfully built pymf
476Installing collected packages: soupsieve, accessible-pygments, pymf, beautifulsoup4, sphinx-tippy, pydata-sphinx-theme, sphinx-book-theme
477Successfully installed accessible-pygments-0.0.4 beautifulsoup4-4.12.3 pydata-sphinx-theme-0.15.2 pymf-0.1.dev68+g91cced2 soupsieve-2.5 sphinx-book-theme-1.1.2 sphinx-tippy-0.4.3
478$ eval "$(micromamba shell hook --shell bash)"
479$ micromamba activate pymf-docs
480$ pip install pytest-cov pytest-randomly pytest-repeat pytest-ruff pytest-regressions
481Collecting pytest-cov
482  Downloading pytest_cov-5.0.0-py3-none-any.whl.metadata (27 kB)
483Collecting pytest-randomly
484  Downloading pytest_randomly-3.15.0-py3-none-any.whl.metadata (8.6 kB)
485Collecting pytest-repeat
486  Downloading pytest_repeat-0.9.3-py3-none-any.whl.metadata (4.9 kB)
487Collecting pytest-ruff
488  Downloading pytest_ruff-0.3.2-py3-none-any.whl.metadata (1.6 kB)
489Collecting pytest-regressions
490  Downloading pytest_regressions-2.5.0-py3-none-any.whl.metadata (4.7 kB)
491Requirement already satisfied: pytest>=4.6 in ./micromamba/envs/pymf-docs/lib/python3.11/site-packages (from pytest-cov) (8.2.0)
492Collecting coverage>=5.2.1 (from coverage[toml]>=5.2.1->pytest-cov)
493  Downloading coverage-7.5.0-cp311-cp311-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (8.2 kB)
494Collecting ruff>=0.0.242 (from pytest-ruff)
495  Downloading ruff-0.4.2-py3-none-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (23 kB)
496Collecting pytest-datadir>=1.2.0 (from pytest-regressions)
497  Downloading pytest_datadir-1.5.0-py3-none-any.whl.metadata (2.6 kB)
498Requirement already satisfied: pyyaml in ./micromamba/envs/pymf-docs/lib/python3.11/site-packages (from pytest-regressions) (6.0.1)
499Requirement already satisfied: iniconfig in ./micromamba/envs/pymf-docs/lib/python3.11/site-packages (from pytest>=4.6->pytest-cov) (2.0.0)
500Requirement already satisfied: packaging in ./micromamba/envs/pymf-docs/lib/python3.11/site-packages (from pytest>=4.6->pytest-cov) (24.0)
501Requirement already satisfied: pluggy<2.0,>=1.5 in ./micromamba/envs/pymf-docs/lib/python3.11/site-packages (from pytest>=4.6->pytest-cov) (1.5.0)
502Downloading pytest_cov-5.0.0-py3-none-any.whl (21 kB)
503Downloading pytest_randomly-3.15.0-py3-none-any.whl (8.7 kB)
504Downloading pytest_repeat-0.9.3-py3-none-any.whl (4.2 kB)
505Downloading pytest_ruff-0.3.2-py3-none-any.whl (4.6 kB)
506Downloading pytest_regressions-2.5.0-py3-none-any.whl (23 kB)
507Downloading coverage-7.5.0-cp311-cp311-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (241 kB)
508   ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 241.3/241.3 kB 8.1 MB/s eta 0:00:00
509Downloading pytest_datadir-1.5.0-py3-none-any.whl (5.1 kB)
510Downloading ruff-0.4.2-py3-none-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (8.8 MB)
511   ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 8.8/8.8 MB 49.3 MB/s eta 0:00:00
512Installing collected packages: ruff, coverage, pytest-ruff, pytest-repeat, pytest-randomly, pytest-datadir, pytest-regressions, pytest-cov
513Successfully installed coverage-7.5.0 pytest-cov-5.0.0 pytest-datadir-1.5.0 pytest-randomly-3.15.0 pytest-regressions-2.5.0 pytest-repeat-0.9.3 pytest-ruff-0.3.2 ruff-0.4.2
514$ py.test
515============================= test session starts ==============================
516platform linux -- Python 3.11.9, pytest-8.2.0, pluggy-1.5.0 -- /builds/qt/kwant-scf/micromamba/envs/pymf-docs/bin/python3.11
517cachedir: .pytest_cache
518Using --randomly-seed=2693023844
519rootdir: /builds/qt/kwant-scf
520configfile: pytest.ini
521testpaths: pymf
522plugins: randomly-3.15.0, repeat-0.9.3, cov-5.0.0, ruff-0.3.2, datadir-1.5.0, regressions-2.5.0
523collecting ... collected 82 items
524pymf/tests/test_hubbard.py::test_gap_hubbard[4] PASSED                   [  1%]
525pymf/tests/test_hubbard.py::test_gap_hubbard[6] PASSED                   [  2%]
526pymf/tests/test_hubbard.py::test_gap_hubbard[2] PASSED                   [  3%]
527pymf/tests/test_hubbard.py::test_gap_hubbard[3] PASSED                   [  4%]
528pymf/tests/test_hubbard.py::test_gap_hubbard[7] PASSED                   [  6%]
529pymf/tests/test_hubbard.py::test_gap_hubbard[5] PASSED                   [  7%]
530pymf/tests/test_hubbard.py::test_gap_hubbard[1] PASSED                   [  8%]
531pymf/tests/test_hubbard.py::test_gap_hubbard[0] PASSED                   [  9%]
532pymf/tests/test_hubbard.py::test_gap_hubbard[8] PASSED                   [ 10%]
533pymf/tests/test_hubbard.py::test_gap_hubbard[9] PASSED                   [ 12%]
534pymf/kwant_helper/__init__.py::ruff PASSED                               [ 13%]
535pymf/__init__.py::ruff PASSED                                            [ 14%]
536pymf/tb/transforms.py::ruff PASSED                                       [ 15%]
537pymf/tb/tb.py::ruff PASSED                                               [ 17%]
538pymf/tb/__init__.py::ruff PASSED                                         [ 18%]
539pymf/params/param_transforms.py::ruff PASSED                             [ 19%]
540pymf/kwant_helper/utils.py::ruff PASSED                                  [ 20%]
541pymf/solvers.py::ruff PASSED                                             [ 21%]
542pymf/_version.py::ruff PASSED                                            [ 23%]
543pymf/kwant_helper/kwant_examples.py::ruff PASSED                         [ 24%]
544pymf/tests/test_graphene.py::ruff PASSED                                 [ 25%]
545pymf/params/__init__.py::ruff PASSED                                     [ 26%]
546pymf/observables.py::ruff PASSED                                         [ 28%]
547pymf/tb/utils.py::ruff PASSED                                            [ 29%]
548pymf/model.py::ruff PASSED                                               [ 30%]
549pymf/params/rparams.py::ruff PASSED                                      [ 31%]
550pymf/mf.py::ruff PASSED                                                  [ 32%]
551pymf/tests/test_hat.py::ruff PASSED                                      [ 34%]
552pymf/tests/test_hubbard.py::ruff PASSED                                  [ 35%]
553pymf/tests/test_params.py::ruff PASSED                                   [ 36%]
554pymf/tests/test_tb.py::ruff PASSED                                       [ 37%]
555pymf/tests/test_zero_hint.py::ruff PASSED                                [ 39%]
556pymf/tests/test_tb.py::test_fourier[6] PASSED                            [ 40%]
557pymf/tests/test_tb.py::test_fourier[1] PASSED                            [ 41%]
558pymf/tests/test_tb.py::test_fourier[9] PASSED                            [ 42%]
559pymf/tests/test_tb.py::test_fourier[8] PASSED                            [ 43%]
560pymf/tests/test_tb.py::test_fourier[2] PASSED                            [ 45%]
561pymf/tests/test_tb.py::test_fourier[3] PASSED                            [ 46%]
562pymf/tests/test_tb.py::test_fourier[5] PASSED                            [ 47%]
563pymf/tests/test_tb.py::test_fourier[4] PASSED                            [ 48%]
564pymf/tests/test_tb.py::test_fourier[0] PASSED                            [ 50%]
565pymf/tests/test_tb.py::test_fourier[7] PASSED                            [ 51%]
566pymf/tests/test_graphene.py::test_gap[2] PASSED                          [ 52%]
567pymf/tests/test_graphene.py::test_gap[7] PASSED                          [ 53%]
568pymf/tests/test_graphene.py::test_gap[5] PASSED                          [ 54%]
569pymf/tests/test_graphene.py::test_gap[6] PASSED                          [ 56%]
570pymf/tests/test_graphene.py::test_gap[8] PASSED                          [ 57%]
571pymf/tests/test_graphene.py::test_gap[0] PASSED                          [ 58%]
572pymf/tests/test_graphene.py::test_gap[9] PASSED                          [ 59%]
573pymf/tests/test_graphene.py::test_gap[4] PASSED                          [ 60%]
574pymf/tests/test_graphene.py::test_gap[1] PASSED                          [ 62%]
575pymf/tests/test_graphene.py::test_gap[3] PASSED                          [ 63%]
576pymf/tests/test_hat.py::test_mexican_hat[8] PASSED                       [ 64%]
577pymf/tests/test_hat.py::test_mexican_hat[9] PASSED                       [ 65%]
578pymf/tests/test_hat.py::test_mexican_hat[4] PASSED                       [ 67%]
579pymf/tests/test_hat.py::test_mexican_hat[2] PASSED                       [ 68%]
580pymf/tests/test_hat.py::test_mexican_hat[6] PASSED                       [ 69%]
581pymf/tests/test_hat.py::test_mexican_hat[0] PASSED                       [ 70%]
582pymf/tests/test_hat.py::test_mexican_hat[5] PASSED                       [ 71%]
583pymf/tests/test_hat.py::test_mexican_hat[3] PASSED                       [ 73%]
584pymf/tests/test_hat.py::test_mexican_hat[7] PASSED                       [ 74%]
585pymf/tests/test_hat.py::test_mexican_hat[1] PASSED                       [ 75%]
586pymf/tests/test_params.py::test_parametrisation[7] PASSED                [ 76%]
587pymf/tests/test_params.py::test_parametrisation[4] PASSED                [ 78%]
588pymf/tests/test_params.py::test_parametrisation[1] PASSED                [ 79%]
589pymf/tests/test_params.py::test_parametrisation[8] PASSED                [ 80%]
590pymf/tests/test_params.py::test_parametrisation[5] PASSED                [ 81%]
591pymf/tests/test_params.py::test_parametrisation[3] PASSED                [ 82%]
592pymf/tests/test_params.py::test_parametrisation[9] PASSED                [ 84%]
593pymf/tests/test_params.py::test_parametrisation[0] PASSED                [ 85%]
594pymf/tests/test_params.py::test_parametrisation[2] PASSED                [ 86%]
595pymf/tests/test_params.py::test_parametrisation[6] PASSED                [ 87%]
596pymf/tests/test_zero_hint.py::test_zero_hint[9] PASSED                   [ 89%]
597pymf/tests/test_zero_hint.py::test_zero_hint[3] PASSED                   [ 90%]
598pymf/tests/test_zero_hint.py::test_zero_hint[8] PASSED                   [ 91%]
599pymf/tests/test_zero_hint.py::test_zero_hint[0] PASSED                   [ 92%]
600pymf/tests/test_zero_hint.py::test_zero_hint[2] PASSED                   [ 93%]
601pymf/tests/test_zero_hint.py::test_zero_hint[4] PASSED                   [ 95%]
602pymf/tests/test_zero_hint.py::test_zero_hint[1] PASSED                   [ 96%]
603pymf/tests/test_zero_hint.py::test_zero_hint[5] PASSED                   [ 97%]
604pymf/tests/test_zero_hint.py::test_zero_hint[7] PASSED                   [ 98%]
605pymf/tests/test_zero_hint.py::test_zero_hint[6] PASSED                   [100%]
606-------------- generated xml file: /builds/qt/kwant-scf/junit.xml --------------
607---------- coverage: platform linux, python 3.11.9-final-0 -----------
608Name                                  Stmts   Miss  Cover
609---------------------------------------------------------
610pymf/__init__.py                          7      7     0%
611pymf/_version.py                         11     11     0%
612pymf/kwant_helper/__init__.py             0      0   100%
613pymf/kwant_helper/kwant_examples.py      18     18     0%
614pymf/kwant_helper/utils.py               70     70     0%
615pymf/mf.py                               37     37     0%
616pymf/model.py                            40     40     0%
617pymf/observables.py                       3      3     0%
618pymf/params/__init__.py                   0      0   100%
619pymf/params/param_transforms.py          28     28     0%
620pymf/params/rparams.py                    6      6     0%
621pymf/solvers.py                          19     19     0%
622pymf/tb/__init__.py                       0      0   100%
623pymf/tb/tb.py                             8      8     0%
624pymf/tb/transforms.py                    34     34     0%
625pymf/tb/utils.py                         24     24     0%
626pymf/tests/test_graphene.py              46      0   100%
627pymf/tests/test_hat.py                   32      0   100%
628pymf/tests/test_hubbard.py               26      0   100%
629pymf/tests/test_params.py                15      0   100%
630pymf/tests/test_tb.py                    20      0   100%
631pymf/tests/test_zero_hint.py             24      0   100%
632---------------------------------------------------------
633TOTAL                                   468    305    35%
634Coverage HTML written to dir htmlcov
635Coverage XML written to file coverage.xml
636======================== 82 passed in 69.79s (0:01:09) =========================
 637  Uploading artifacts for successful job  
  00:04
638Uploading artifacts...
639htmlcov: found 33 matching files and directories   
640Uploading artifacts as "archive" to coordinator... 201 Created  id=421567 responseStatus=201 Created token=glcbt-64
641Uploading artifacts...
642junit.xml: found 1 matching files and directories  
643Uploading artifacts as "junit" to coordinator... 201 Created  id=421567 responseStatus=201 Created token=glcbt-64
644Uploading artifacts...
645coverage.xml: found 1 matching files and directories 
646Uploading artifacts as "cobertura" to coordinator... 201 Created  id=421567 responseStatus=201 Created token=glcbt-64
 647  Cleaning up project directory and file based variables  
  00:02
648Job succeeded