run tests

Passed Started 10 months ago by
1Running with gitlab-runner 15.4.0 (43b2dc3d)
2  on universal-tn4 d3cf9985
 3  Preparing the "docker" executor  
  00:14
4Using Docker executor with image mambaorg/micromamba:1.4.3 ...
5Authenticating with credentials from /root/.docker/config.json
6Pulling docker image mambaorg/micromamba:1.4.3 ...
7Using docker image sha256:bcfdda4930c6becbd40d3a8eb6d835e4d2275d16767fdd5000a25507d1c56b02 for mambaorg/micromamba:1.4.3 with digest mambaorg/micromamba@sha256:25b00e28c39abc2e698943c2279fa865d0ec7c97891c7faecafb5c6417313e71 ...
 8  Preparing environment  
  00:07
9Running on runner-d3cf9985-project-3642-concurrent-0 via tnw-tn4.tudelft.net...
 10  Getting source from Git repository  
  00:17
11Fetching changes with git depth set to 20...
12Reinitialized existing Git repository in /builds/qt/kwant-scf/.git/
13Checking out c42409b7 as examples...
14Removing docs/build/
15Removing htmlcov/
16Removing memoryProfile.bin
17Removing micromamba/
18Removing public/
19Removing pymf/_version.py
20Removing timeProfile.html
21Skipping Git submodules setup
 22  Executing "step_script" stage of the job script  
  03:58
23Using docker image sha256:bcfdda4930c6becbd40d3a8eb6d835e4d2275d16767fdd5000a25507d1c56b02 for mambaorg/micromamba:1.4.3 with digest mambaorg/micromamba@sha256:25b00e28c39abc2e698943c2279fa865d0ec7c97891c7faecafb5c6417313e71 ...
24$ mkdir -p micromamba
25$ export MAMBA_ROOT_PREFIX=micromamba
26$ micromamba create -yf docs/environment.yml
27                                           __
28          __  ______ ___  ____ _____ ___  / /_  ____ _
29         / / / / __ `__ \/ __ `/ __ `__ \/ __ \/ __ `/
30        / /_/ / / / / / / /_/ / / / / / / /_/ / /_/ /
31       / .___/_/ /_/ /_/\__,_/_/ /_/ /_/_.___/\__,_/
32      /_/
33Transaction
34  Prefix: /builds/qt/kwant-scf/micromamba/envs/pymf-docs
35  Updating specs:
36   - python=3.11
37   - kwant
38   - myst-nb
39   - numpy
40   - scipy
41   - matplotlib-base
42   - sphinx-togglebutton
43   - sphinx-copybutton
44   - pip
45   - git
46   - make
47  Package                               Version  Build                    Channel          Size
48─────────────────────────────────────────────────────────────────────────────────────────────────
49  Install:
50─────────────────────────────────────────────────────────────────────────────────────────────────
51  + _libgcc_mutex                           0.1  conda_forge              conda-forge       3kB
52  + _openmp_mutex                           4.5  2_gnu                    conda-forge      24kB
53  + alabaster                            0.7.16  pyhd8ed1ab_0             conda-forge      18kB
54  + asttokens                             2.4.1  pyhd8ed1ab_0             conda-forge      29kB
55  + attrs                                23.2.0  pyh71513ae_0             conda-forge      55kB
56  + babel                                2.14.0  pyhd8ed1ab_0             conda-forge       8MB
57  + brotli                                1.1.0  hd590300_1               conda-forge      19kB
58  + brotli-bin                            1.1.0  hd590300_1               conda-forge      19kB
59  + brotli-python                         1.1.0  py311hb755f60_1          conda-forge     351kB
60  + bzip2                                 1.0.8  hd590300_5               conda-forge     254kB
61  + c-ares                               1.28.1  hd590300_0               conda-forge     169kB
62  + ca-certificates                    2024.2.2  hbcca054_0               conda-forge     155kB
63  + certifi                            2024.2.2  pyhd8ed1ab_0             conda-forge     161kB
64  + charset-normalizer                    3.3.2  pyhd8ed1ab_0             conda-forge      47kB
65  + click                                 8.1.7  unix_pyh707e725_0        conda-forge      84kB
66  + colorama                              0.4.6  pyhd8ed1ab_0             conda-forge      25kB
67  + comm                                  0.2.2  pyhd8ed1ab_0             conda-forge      12kB
68  + contourpy                             1.2.1  py311h9547e67_0          conda-forge     259kB
69  + cycler                               0.12.1  pyhd8ed1ab_0             conda-forge      13kB
70  + debugpy                               1.8.1  py311hb755f60_0          conda-forge       2MB
71  + decorator                             5.1.1  pyhd8ed1ab_0             conda-forge      12kB
72  + docutils                             0.21.2  pyhd8ed1ab_0             conda-forge     403kB
73  + exceptiongroup                        1.2.0  pyhd8ed1ab_2             conda-forge      21kB
74  + executing                             2.0.1  pyhd8ed1ab_0             conda-forge      28kB
75  + fonttools                            4.51.0  py311h459d7ec_0          conda-forge       3MB
76  + freetype                             2.12.1  h267a509_2               conda-forge     635kB
77  + git                                  2.45.0  pl5321hef9f9f3_1         conda-forge      11MB
78  + gmp                                   6.3.0  h59595ed_1               conda-forge     570kB
79  + gmpy2                                 2.1.5  py311he48d604_0          conda-forge     203kB
80  + greenlet                              3.0.3  py311hb755f60_0          conda-forge     236kB
81  + idna                                    3.7  pyhd8ed1ab_0             conda-forge      53kB
82  + imagesize                             1.4.1  pyhd8ed1ab_0             conda-forge      10kB
83  + importlib-metadata                    7.1.0  pyha770c72_0             conda-forge      27kB
84  + importlib_metadata                    7.1.0  hd8ed1ab_0               conda-forge       9kB
85  + importlib_resources                   6.4.0  pyhd8ed1ab_0             conda-forge      33kB
86  + iniconfig                             2.0.0  pyhd8ed1ab_0             conda-forge      11kB
87  + ipykernel                            6.29.3  pyhd33586a_0             conda-forge     119kB
88  + ipython                              8.22.2  pyh707e725_0             conda-forge     594kB
89  + jedi                                 0.19.1  pyhd8ed1ab_0             conda-forge     841kB
90  + jinja2                                3.1.4  pyhd8ed1ab_0             conda-forge     112kB
91  + jsonschema                           4.22.0  pyhd8ed1ab_0             conda-forge      74kB
92  + jsonschema-specifications         2023.12.1  pyhd8ed1ab_0             conda-forge      16kB
93  + jupyter-cache                         1.0.0  pyhd8ed1ab_0             conda-forge      31kB
94  + jupyter_client                        8.6.1  pyhd8ed1ab_0             conda-forge     106kB
95  + jupyter_core                          5.7.2  py311h38be061_0          conda-forge      95kB
96  + keyutils                              1.6.1  h166bdaf_0               conda-forge     118kB
97  + kiwisolver                            1.4.5  py311h9547e67_1          conda-forge      73kB
98  + krb5                                 1.21.2  h659d440_0               conda-forge       1MB
99  + kwant                                 1.4.4  nompi_py311h4611361_103  conda-forge       1MB
100  + lcms2                                  2.16  hb7c19ff_0               conda-forge     245kB
101  + ld_impl_linux-64                       2.40  h55db66e_0               conda-forge     713kB
102  + lerc                                  4.0.0  h27087fc_0               conda-forge     282kB
103  + libblas                               3.9.0  22_linux64_openblas      conda-forge      15kB
104  + libbrotlicommon                       1.1.0  hd590300_1               conda-forge      69kB
105  + libbrotlidec                          1.1.0  hd590300_1               conda-forge      33kB
106  + libbrotlienc                          1.1.0  hd590300_1               conda-forge     283kB
107  + libcblas                              3.9.0  22_linux64_openblas      conda-forge      14kB
108  + libcurl                               8.7.1  hca28451_0               conda-forge     398kB
109  + libdeflate                             1.20  hd590300_0               conda-forge      72kB
110  + libedit                        3.1.20191231  he28a2e2_2               conda-forge     124kB
111  + libev                                  4.33  hd590300_2               conda-forge     113kB
112  + libexpat                              2.6.2  h59595ed_0               conda-forge      74kB
113  + libffi                                3.4.2  h7f98852_5               conda-forge      58kB
114  + libgcc-ng                            13.2.0  h77fa898_7               conda-forge     776kB
115  + libgfortran-ng                       13.2.0  h69a702a_7               conda-forge      24kB
116  + libgfortran5                         13.2.0  hca663fb_7               conda-forge       1MB
117  + libgomp                              13.2.0  h77fa898_7               conda-forge     422kB
118  + libiconv                               1.17  hd590300_2               conda-forge     706kB
119  + libjpeg-turbo                         3.0.0  hd590300_1               conda-forge     619kB
120  + liblapack                             3.9.0  22_linux64_openblas      conda-forge      14kB
121  + libnghttp2                           1.58.0  h47da74e_1               conda-forge     632kB
122  + libnsl                                2.0.1  hd590300_0               conda-forge      33kB
123  + libopenblas                          0.3.27  pthreads_h413a1c8_0      conda-forge       6MB
124  + libpng                               1.6.43  h2797004_0               conda-forge     288kB
125  + libscotch                             7.0.4  h91e35bf_1               conda-forge     340kB
126  + libsodium                            1.0.18  h36c2ea0_1               conda-forge     375kB
127  + libsqlite                            3.45.3  h2797004_0               conda-forge     860kB
128  + libssh2                              1.11.0  h0841786_0               conda-forge     271kB
129  + libstdcxx-ng                         13.2.0  hc0a3c3a_7               conda-forge       4MB
130  + libtiff                               4.6.0  h1dd3fc0_3               conda-forge     283kB
131  + libuuid                              2.38.1  h0b41bf4_0               conda-forge      34kB
132  + libwebp-base                          1.4.0  hd590300_0               conda-forge     439kB
133  + libxcb                                 1.15  h0b41bf4_0               conda-forge     384kB
134  + libxcrypt                            4.4.36  hd590300_1               conda-forge     100kB
135  + libzlib                              1.2.13  hd590300_5               conda-forge      62kB
136  + make                                    4.3  hd18ef5c_1               conda-forge     519kB
137  + markdown-it-py                        3.0.0  pyhd8ed1ab_0             conda-forge      64kB
138  + markupsafe                            2.1.5  py311h459d7ec_0          conda-forge      28kB
139  + matplotlib-base                       3.8.4  py311h54ef318_0          conda-forge       8MB
140  + matplotlib-inline                     0.1.7  pyhd8ed1ab_0             conda-forge      15kB
141  + mdit-py-plugins                       0.4.0  pyhd8ed1ab_0             conda-forge      41kB
142  + mdurl                                 0.1.2  pyhd8ed1ab_0             conda-forge      15kB
143  + metis                                 5.1.0  h59595ed_1007            conda-forge       4MB
144  + mpc                                   1.3.1  hfe3b2da_0               conda-forge     116kB
145  + mpfr                                  4.2.1  h9458935_1               conda-forge     643kB
146  + mpmath                                1.3.0  pyhd8ed1ab_0             conda-forge     438kB
147  + mumps-include                         5.7.1  ha770c72_0               conda-forge      22kB
148  + mumps-seq                             5.7.1  h6e8dedb_0               conda-forge       2MB
149  + munkres                               1.1.4  pyh9f0ad1d_0             conda-forge      12kB
150  + myst-nb                               1.1.0  pyhd8ed1ab_0             conda-forge      63kB
151  + myst-parser                           3.0.1  pyhd8ed1ab_0             conda-forge      72kB
152  + nbclient                             0.10.0  pyhd8ed1ab_0             conda-forge      28kB
153  + nbformat                             5.10.4  pyhd8ed1ab_0             conda-forge     101kB
154  + ncurses                        6.4.20240210  h59595ed_0               conda-forge     896kB
155  + nest-asyncio                          1.6.0  pyhd8ed1ab_0             conda-forge      12kB
156  + numpy                                1.26.4  py311h64a7726_0          conda-forge       8MB
157  + openjpeg                              2.5.2  h488ebb8_0               conda-forge     342kB
158  + openssl                               3.3.0  hd590300_0               conda-forge       3MB
159  + packaging                              24.0  pyhd8ed1ab_0             conda-forge      50kB
160  + parso                                 0.8.4  pyhd8ed1ab_0             conda-forge      75kB
161  + pcre2                                 10.43  hcad00b1_0               conda-forge     951kB
162  + perl                                 5.32.1  7_hd590300_perl5         conda-forge      13MB
163  + pexpect                               4.9.0  pyhd8ed1ab_0             conda-forge      54kB
164  + pickleshare                           0.7.5  py_1003                  conda-forge       9kB
165  + pillow                               10.3.0  py311h18e6fac_0          conda-forge      43MB
166  + pip                                    24.0  pyhd8ed1ab_0             conda-forge       1MB
167  + pkgutil-resolve-name                 1.3.10  pyhd8ed1ab_1             conda-forge      11kB
168  + platformdirs                          4.2.1  pyhd8ed1ab_0             conda-forge      20kB
169  + pluggy                                1.5.0  pyhd8ed1ab_0             conda-forge      24kB
170  + prompt-toolkit                       3.0.42  pyha770c72_0             conda-forge     270kB
171  + psutil                                5.9.8  py311h459d7ec_0          conda-forge     506kB
172  + pthread-stubs                           0.4  h36c2ea0_1001            conda-forge       6kB
173  + ptyprocess                            0.7.0  pyhd3deb0d_0             conda-forge      17kB
174  + pure_eval                             0.2.2  pyhd8ed1ab_0             conda-forge      15kB
175  + pygments                             2.18.0  pyhd8ed1ab_0             conda-forge     879kB
176  + pyparsing                             3.1.2  pyhd8ed1ab_0             conda-forge      89kB
177  + pysocks                               1.7.1  pyha2e5f31_6             conda-forge      19kB
178  + pytest                                8.2.0  pyhd8ed1ab_0             conda-forge     257kB
179  + python                               3.11.9  hb806964_0_cpython       conda-forge      31MB
180  + python-dateutil                       2.9.0  pyhd8ed1ab_0             conda-forge     223kB
181  + python-fastjsonschema                2.19.1  pyhd8ed1ab_0             conda-forge     225kB
182  + python_abi                             3.11  4_cp311                  conda-forge       6kB
183  + pytz                                 2024.1  pyhd8ed1ab_0             conda-forge     189kB
184  + pyyaml                                6.0.1  py311h459d7ec_1          conda-forge     201kB
185  + pyzmq                                26.0.3  py311h08a0b41_0          conda-forge     475kB
186  + qsymm                                 1.4.0  pyhd8ed1ab_0             conda-forge      71kB
187  + readline                                8.2  h8228510_1               conda-forge     281kB
188  + referencing                          0.35.1  pyhd8ed1ab_0             conda-forge      42kB
189  + requests                             2.31.0  pyhd8ed1ab_0             conda-forge      57kB
190  + rpds-py                              0.18.1  py311h5ecf98a_0          conda-forge     921kB
191  + scipy                                1.13.0  py311h517d4fd_1          conda-forge      17MB
192  + scotch                                7.0.4  h23d43cc_1               conda-forge      92kB
193  + setuptools                           69.5.1  pyhd8ed1ab_0             conda-forge     502kB
194  + six                                  1.16.0  pyh6c4a22f_0             conda-forge      14kB
195  + snowballstemmer                       2.2.0  pyhd8ed1ab_0             conda-forge      59kB
196  + sphinx                                7.3.7  pyhd8ed1ab_0             conda-forge       1MB
197  + sphinx-copybutton                     0.5.2  pyhd8ed1ab_0             conda-forge      18kB
198  + sphinx-togglebutton                   0.3.2  pyhd8ed1ab_0             conda-forge      12kB
199  + sphinxcontrib-applehelp               1.0.8  pyhd8ed1ab_0             conda-forge      30kB
200  + sphinxcontrib-devhelp                 1.0.6  pyhd8ed1ab_0             conda-forge      24kB
201  + sphinxcontrib-htmlhelp                2.0.5  pyhd8ed1ab_0             conda-forge      33kB
202  + sphinxcontrib-jsmath                  1.0.1  pyhd8ed1ab_0             conda-forge      10kB
203  + sphinxcontrib-qthelp                  1.0.7  pyhd8ed1ab_0             conda-forge      27kB
204  + sphinxcontrib-serializinghtml        1.1.10  pyhd8ed1ab_0             conda-forge      29kB
205  + sqlalchemy                           2.0.30  py311h331c9d8_0          conda-forge       4MB
206  + stack_data                            0.6.2  pyhd8ed1ab_0             conda-forge      26kB
207  + sympy                                  1.12  pypyh9d50eac_103         conda-forge       4MB
208  + tabulate                              0.9.0  pyhd8ed1ab_1             conda-forge      36kB
209  + tinyarray                             1.2.4  py311h320fe9a_3          conda-forge      61kB
210  + tk                                   8.6.13  noxft_h4845f30_101       conda-forge       3MB
211  + tomli                                 2.0.1  pyhd8ed1ab_0             conda-forge      16kB
212  + tornado                                 6.4  py311h459d7ec_0          conda-forge     853kB
213  + traitlets                            5.14.3  pyhd8ed1ab_0             conda-forge     110kB
214  + typing-extensions                    4.11.0  hd8ed1ab_0               conda-forge      10kB
215  + typing_extensions                    4.11.0  pyha770c72_0             conda-forge      38kB
216  + tzdata                                2024a  h0c530f3_0               conda-forge     120kB
217  + urllib3                               2.2.1  pyhd8ed1ab_0             conda-forge      95kB
218  + wcwidth                              0.2.13  pyhd8ed1ab_0             conda-forge      33kB
219  + wheel                                0.43.0  pyhd8ed1ab_1             conda-forge      58kB
220  + xorg-libxau                          1.0.11  hd590300_0               conda-forge      14kB
221  + xorg-libxdmcp                         1.1.3  h7f98852_0               conda-forge      19kB
222  + xz                                    5.2.6  h166bdaf_0               conda-forge     418kB
223  + yaml                                  0.2.5  h7f98852_2               conda-forge      89kB
224  + zeromq                                4.3.5  h75354e8_3               conda-forge     352kB
225  + zipp                                 3.17.0  pyhd8ed1ab_0             conda-forge      19kB
226  + zlib                                 1.2.13  hd590300_5               conda-forge      93kB
227  + zstd                                  1.5.6  ha6fb4c9_0               conda-forge     555kB
228  Summary:
229  Install: 177 packages
230  Total download: 208MB
231─────────────────────────────────────────────────────────────────────────────────────────────────
232Transaction starting
233Linking mumps-include-5.7.1-ha770c72_0
234Linking _libgcc_mutex-0.1-conda_forge
235Linking python_abi-3.11-4_cp311
236Linking libstdcxx-ng-13.2.0-hc0a3c3a_7
237Linking ca-certificates-2024.2.2-hbcca054_0
238Linking ld_impl_linux-64-2.40-h55db66e_0
239Linking libgomp-13.2.0-h77fa898_7
240Linking _openmp_mutex-4.5-2_gnu
241Linking libgcc-ng-13.2.0-h77fa898_7
242Linking xorg-libxdmcp-1.1.3-h7f98852_0
243Linking pthread-stubs-0.4-h36c2ea0_1001
244Linking libsodium-1.0.18-h36c2ea0_1
245Linking c-ares-1.28.1-hd590300_0
246Linking libev-4.33-hd590300_2
247Linking gmp-6.3.0-h59595ed_1
248Linking libwebp-base-1.4.0-hd590300_0
249Linking libbrotlicommon-1.1.0-hd590300_1
250Linking libiconv-1.17-hd590300_2
251Linking libdeflate-1.20-hd590300_0
252Linking lerc-4.0.0-h27087fc_0
253Linking libjpeg-turbo-3.0.0-hd590300_1
254Linking xorg-libxau-1.0.11-hd590300_0
255Linking metis-5.1.0-h59595ed_1007
256Linking libxcrypt-4.4.36-hd590300_1
257Linking libzlib-1.2.13-hd590300_5
258Linking libffi-3.4.2-h7f98852_5
259Linking bzip2-1.0.8-hd590300_5
260Linking yaml-0.2.5-h7f98852_2
261Linking libgfortran5-13.2.0-hca663fb_7
262Linking make-4.3-hd18ef5c_1
263Linking keyutils-1.6.1-h166bdaf_0
264Linking openssl-3.3.0-hd590300_0
265Linking ncurses-6.4.20240210-h59595ed_0
266Linking libuuid-2.38.1-h0b41bf4_0
267Linking libnsl-2.0.1-hd590300_0
268Linking libexpat-2.6.2-h59595ed_0
269Linking xz-5.2.6-h166bdaf_0
270Linking mpfr-4.2.1-h9458935_1
271Linking libbrotlienc-1.1.0-hd590300_1
272Linking libbrotlidec-1.1.0-hd590300_1
273Linking libxcb-1.15-h0b41bf4_0
274Linking perl-5.32.1-7_hd590300_perl5
275Linking zlib-1.2.13-hd590300_5
276Linking zstd-1.5.6-ha6fb4c9_0
277Linking libpng-1.6.43-h2797004_0
278Linking tk-8.6.13-noxft_h4845f30_101
279Linking libsqlite-3.45.3-h2797004_0
280Linking pcre2-10.43-hcad00b1_0
281Linking libgfortran-ng-13.2.0-h69a702a_7
282Linking libnghttp2-1.58.0-h47da74e_1
283Linking libssh2-1.11.0-h0841786_0
284Linking libedit-3.1.20191231-he28a2e2_2
285Linking readline-8.2-h8228510_1
286Linking mpc-1.3.1-hfe3b2da_0
287Linking brotli-bin-1.1.0-hd590300_1
288Linking libtiff-4.6.0-h1dd3fc0_3
289Linking freetype-2.12.1-h267a509_2
290Linking libscotch-7.0.4-h91e35bf_1
291Linking libopenblas-0.3.27-pthreads_h413a1c8_0
292Linking krb5-1.21.2-h659d440_0
293Linking brotli-1.1.0-hd590300_1
294Linking openjpeg-2.5.2-h488ebb8_0
295Linking lcms2-2.16-hb7c19ff_0
296Linking scotch-7.0.4-h23d43cc_1
297Linking libblas-3.9.0-22_linux64_openblas
298Linking zeromq-4.3.5-h75354e8_3
299Linking libcurl-8.7.1-hca28451_0
300Linking libcblas-3.9.0-22_linux64_openblas
301Linking liblapack-3.9.0-22_linux64_openblas
302Linking git-2.45.0-pl5321hef9f9f3_1
303Linking mumps-seq-5.7.1-h6e8dedb_0
304Linking tzdata-2024a-h0c530f3_0
305Linking python-3.11.9-hb806964_0_cpython
306Linking wheel-0.43.0-pyhd8ed1ab_1
307Linking setuptools-69.5.1-pyhd8ed1ab_0
308Linking pip-24.0-pyhd8ed1ab_0
309Linking sphinxcontrib-jsmath-1.0.1-pyhd8ed1ab_0
310Linking parso-0.8.4-pyhd8ed1ab_0
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343Linking tomli-2.0.1-pyhd8ed1ab_0
344Linking snowballstemmer-2.2.0-pyhd8ed1ab_0
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367Linking gmpy2-2.1.5-py311he48d604_0
368Linking brotli-python-1.1.0-py311hb755f60_1
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383Linking contourpy-1.2.1-py311h9547e67_0
384Linking scipy-1.13.0-py311h517d4fd_1
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391Linking jsonschema-specifications-2023.12.1-pyhd8ed1ab_0
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401Linking sphinxcontrib-htmlhelp-2.0.5-pyhd8ed1ab_0
402Linking jupyter-cache-1.0.0-pyhd8ed1ab_0
403Linking sphinxcontrib-qthelp-1.0.7-pyhd8ed1ab_0
404Linking sphinxcontrib-serializinghtml-1.1.10-pyhd8ed1ab_0
405Linking myst-parser-3.0.1-pyhd8ed1ab_0
406Linking sphinx-copybutton-0.5.2-pyhd8ed1ab_0
407Linking sphinx-togglebutton-0.3.2-pyhd8ed1ab_0
408Linking myst-nb-1.1.0-pyhd8ed1ab_0
409Linking kwant-1.4.4-nompi_py311h4611361_103
410Transaction finished
411To activate this environment, use:
412    micromamba activate pymf-docs
413Or to execute a single command in this environment, use:
414    micromamba run -n pymf-docs mycommand
415Installing pip packages: sphinx-book-theme>=1.1.0, sphinx-tippy, ..
416Processing /builds/qt/kwant-scf
417  Installing build dependencies: started
418  Installing build dependencies: finished with status 'done'
419  Getting requirements to build wheel: started
420  Getting requirements to build wheel: finished with status 'done'
421  Preparing metadata (pyproject.toml): started
422  Preparing metadata (pyproject.toml): finished with status 'done'
423Collecting sphinx-book-theme>=1.1.0 (from -r /builds/qt/kwant-scf/docs/mambaf1wzKl8XFhv (line 1))
424  Downloading sphinx_book_theme-1.1.2-py3-none-any.whl.metadata (5.7 kB)
425Collecting sphinx-tippy (from -r /builds/qt/kwant-scf/docs/mambaf1wzKl8XFhv (line 2))
426  Downloading sphinx_tippy-0.4.3-py3-none-any.whl.metadata (1.2 kB)
427Requirement already satisfied: sphinx>=5 in /builds/qt/kwant-scf/micromamba/envs/pymf-docs/lib/python3.11/site-packages (from sphinx-book-theme>=1.1.0->-r /builds/qt/kwant-scf/docs/mambaf1wzKl8XFhv (line 1)) (7.3.7)
428Collecting pydata-sphinx-theme>=0.14 (from sphinx-book-theme>=1.1.0->-r /builds/qt/kwant-scf/docs/mambaf1wzKl8XFhv (line 1))
429  Downloading pydata_sphinx_theme-0.15.2-py3-none-any.whl.metadata (7.3 kB)
430Collecting beautifulsoup4 (from sphinx-tippy->-r /builds/qt/kwant-scf/docs/mambaf1wzKl8XFhv (line 2))
431  Downloading beautifulsoup4-4.12.3-py3-none-any.whl.metadata (3.8 kB)
432Requirement already satisfied: jinja2 in /builds/qt/kwant-scf/micromamba/envs/pymf-docs/lib/python3.11/site-packages (from sphinx-tippy->-r /builds/qt/kwant-scf/docs/mambaf1wzKl8XFhv (line 2)) (3.1.4)
433Requirement already satisfied: requests in /builds/qt/kwant-scf/micromamba/envs/pymf-docs/lib/python3.11/site-packages (from sphinx-tippy->-r /builds/qt/kwant-scf/docs/mambaf1wzKl8XFhv (line 2)) (2.31.0)
434Requirement already satisfied: numpy>=1.23 in /builds/qt/kwant-scf/micromamba/envs/pymf-docs/lib/python3.11/site-packages (from pymf==0.1.dev72+gc42409b->-r /builds/qt/kwant-scf/docs/mambaf1wzKl8XFhv (line 3)) (1.26.4)
435Requirement already satisfied: packaging>=22.0 in /builds/qt/kwant-scf/micromamba/envs/pymf-docs/lib/python3.11/site-packages (from pymf==0.1.dev72+gc42409b->-r /builds/qt/kwant-scf/docs/mambaf1wzKl8XFhv (line 3)) (24.0)
436Requirement already satisfied: scipy>=1.8 in /builds/qt/kwant-scf/micromamba/envs/pymf-docs/lib/python3.11/site-packages (from pymf==0.1.dev72+gc42409b->-r /builds/qt/kwant-scf/docs/mambaf1wzKl8XFhv (line 3)) (1.13.0)
437Requirement already satisfied: docutils!=0.17.0 in /builds/qt/kwant-scf/micromamba/envs/pymf-docs/lib/python3.11/site-packages (from pydata-sphinx-theme>=0.14->sphinx-book-theme>=1.1.0->-r /builds/qt/kwant-scf/docs/mambaf1wzKl8XFhv (line 1)) (0.21.2)
438Requirement already satisfied: Babel in /builds/qt/kwant-scf/micromamba/envs/pymf-docs/lib/python3.11/site-packages (from pydata-sphinx-theme>=0.14->sphinx-book-theme>=1.1.0->-r /builds/qt/kwant-scf/docs/mambaf1wzKl8XFhv (line 1)) (2.14.0)
439Requirement already satisfied: pygments>=2.7 in /builds/qt/kwant-scf/micromamba/envs/pymf-docs/lib/python3.11/site-packages (from pydata-sphinx-theme>=0.14->sphinx-book-theme>=1.1.0->-r /builds/qt/kwant-scf/docs/mambaf1wzKl8XFhv (line 1)) (2.18.0)
440Collecting accessible-pygments (from pydata-sphinx-theme>=0.14->sphinx-book-theme>=1.1.0->-r /builds/qt/kwant-scf/docs/mambaf1wzKl8XFhv (line 1))
441  Downloading accessible_pygments-0.0.4-py2.py3-none-any.whl.metadata (6.0 kB)
442Requirement already satisfied: typing-extensions in /builds/qt/kwant-scf/micromamba/envs/pymf-docs/lib/python3.11/site-packages (from pydata-sphinx-theme>=0.14->sphinx-book-theme>=1.1.0->-r /builds/qt/kwant-scf/docs/mambaf1wzKl8XFhv (line 1)) (4.11.0)
443Requirement already satisfied: sphinxcontrib-applehelp in /builds/qt/kwant-scf/micromamba/envs/pymf-docs/lib/python3.11/site-packages (from sphinx>=5->sphinx-book-theme>=1.1.0->-r /builds/qt/kwant-scf/docs/mambaf1wzKl8XFhv (line 1)) (1.0.8)
444Requirement already satisfied: sphinxcontrib-devhelp in /builds/qt/kwant-scf/micromamba/envs/pymf-docs/lib/python3.11/site-packages (from sphinx>=5->sphinx-book-theme>=1.1.0->-r /builds/qt/kwant-scf/docs/mambaf1wzKl8XFhv (line 1)) (1.0.6)
445Requirement already satisfied: sphinxcontrib-jsmath in /builds/qt/kwant-scf/micromamba/envs/pymf-docs/lib/python3.11/site-packages (from sphinx>=5->sphinx-book-theme>=1.1.0->-r /builds/qt/kwant-scf/docs/mambaf1wzKl8XFhv (line 1)) (1.0.1)
446Requirement already satisfied: sphinxcontrib-htmlhelp>=2.0.0 in /builds/qt/kwant-scf/micromamba/envs/pymf-docs/lib/python3.11/site-packages (from sphinx>=5->sphinx-book-theme>=1.1.0->-r /builds/qt/kwant-scf/docs/mambaf1wzKl8XFhv (line 1)) (2.0.5)
447Requirement already satisfied: sphinxcontrib-serializinghtml>=1.1.9 in /builds/qt/kwant-scf/micromamba/envs/pymf-docs/lib/python3.11/site-packages (from sphinx>=5->sphinx-book-theme>=1.1.0->-r /builds/qt/kwant-scf/docs/mambaf1wzKl8XFhv (line 1)) (1.1.10)
448Requirement already satisfied: sphinxcontrib-qthelp in /builds/qt/kwant-scf/micromamba/envs/pymf-docs/lib/python3.11/site-packages (from sphinx>=5->sphinx-book-theme>=1.1.0->-r /builds/qt/kwant-scf/docs/mambaf1wzKl8XFhv (line 1)) (1.0.7)
449Requirement already satisfied: snowballstemmer>=2.0 in /builds/qt/kwant-scf/micromamba/envs/pymf-docs/lib/python3.11/site-packages (from sphinx>=5->sphinx-book-theme>=1.1.0->-r /builds/qt/kwant-scf/docs/mambaf1wzKl8XFhv (line 1)) (2.2.0)
450Requirement already satisfied: alabaster~=0.7.14 in /builds/qt/kwant-scf/micromamba/envs/pymf-docs/lib/python3.11/site-packages (from sphinx>=5->sphinx-book-theme>=1.1.0->-r /builds/qt/kwant-scf/docs/mambaf1wzKl8XFhv (line 1)) (0.7.16)
451Requirement already satisfied: imagesize>=1.3 in /builds/qt/kwant-scf/micromamba/envs/pymf-docs/lib/python3.11/site-packages (from sphinx>=5->sphinx-book-theme>=1.1.0->-r /builds/qt/kwant-scf/docs/mambaf1wzKl8XFhv (line 1)) (1.4.1)
452Requirement already satisfied: MarkupSafe>=2.0 in /builds/qt/kwant-scf/micromamba/envs/pymf-docs/lib/python3.11/site-packages (from jinja2->sphinx-tippy->-r /builds/qt/kwant-scf/docs/mambaf1wzKl8XFhv (line 2)) (2.1.5)
453Requirement already satisfied: charset-normalizer<4,>=2 in /builds/qt/kwant-scf/micromamba/envs/pymf-docs/lib/python3.11/site-packages (from requests->sphinx-tippy->-r /builds/qt/kwant-scf/docs/mambaf1wzKl8XFhv (line 2)) (3.3.2)
454Requirement already satisfied: idna<4,>=2.5 in /builds/qt/kwant-scf/micromamba/envs/pymf-docs/lib/python3.11/site-packages (from requests->sphinx-tippy->-r /builds/qt/kwant-scf/docs/mambaf1wzKl8XFhv (line 2)) (3.7)
455Requirement already satisfied: urllib3<3,>=1.21.1 in /builds/qt/kwant-scf/micromamba/envs/pymf-docs/lib/python3.11/site-packages (from requests->sphinx-tippy->-r /builds/qt/kwant-scf/docs/mambaf1wzKl8XFhv (line 2)) (2.2.1)
456Requirement already satisfied: certifi>=2017.4.17 in /builds/qt/kwant-scf/micromamba/envs/pymf-docs/lib/python3.11/site-packages (from requests->sphinx-tippy->-r /builds/qt/kwant-scf/docs/mambaf1wzKl8XFhv (line 2)) (2024.2.2)
457Collecting soupsieve>1.2 (from beautifulsoup4->sphinx-tippy->-r /builds/qt/kwant-scf/docs/mambaf1wzKl8XFhv (line 2))
458  Downloading soupsieve-2.5-py3-none-any.whl.metadata (4.7 kB)
459Downloading sphinx_book_theme-1.1.2-py3-none-any.whl (400 kB)
460   ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 400.8/400.8 kB 6.3 MB/s eta 0:00:00
461Downloading sphinx_tippy-0.4.3-py3-none-any.whl (10.0 kB)
462Downloading pydata_sphinx_theme-0.15.2-py3-none-any.whl (4.5 MB)
463   ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 4.5/4.5 MB 41.1 MB/s eta 0:00:00
464Downloading beautifulsoup4-4.12.3-py3-none-any.whl (147 kB)
465   ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 147.9/147.9 kB 1.6 MB/s eta 0:00:00
466Downloading soupsieve-2.5-py3-none-any.whl (36 kB)
467Downloading accessible_pygments-0.0.4-py2.py3-none-any.whl (29 kB)
468Building wheels for collected packages: pymf
469  Building wheel for pymf (pyproject.toml): started
470  Building wheel for pymf (pyproject.toml): finished with status 'done'
471  Created wheel for pymf: filename=pymf-0.1.dev72+gc42409b-py3-none-any.whl size=18372 sha256=1f5ff4d02b2c7c07f757cfea86fff8c66646abfbaa5d02c5d1c421c02c45afc2
472  Stored in directory: /home/mambauser/.cache/pip/wheels/5b/06/10/8869722029570f6f33627b817da751714f487bfb77cdb04f2f
473Successfully built pymf
474Installing collected packages: soupsieve, accessible-pygments, pymf, beautifulsoup4, sphinx-tippy, pydata-sphinx-theme, sphinx-book-theme
475Successfully installed accessible-pygments-0.0.4 beautifulsoup4-4.12.3 pydata-sphinx-theme-0.15.2 pymf-0.1.dev72+gc42409b soupsieve-2.5 sphinx-book-theme-1.1.2 sphinx-tippy-0.4.3
476$ eval "$(micromamba shell hook --shell bash)"
477$ micromamba activate pymf-docs
478$ pip install pytest-cov pytest-randomly pytest-repeat pytest-ruff pytest-regressions
479Collecting pytest-cov
480  Downloading pytest_cov-5.0.0-py3-none-any.whl.metadata (27 kB)
481Collecting pytest-randomly
482  Downloading pytest_randomly-3.15.0-py3-none-any.whl.metadata (8.6 kB)
483Collecting pytest-repeat
484  Downloading pytest_repeat-0.9.3-py3-none-any.whl.metadata (4.9 kB)
485Collecting pytest-ruff
486  Downloading pytest_ruff-0.3.2-py3-none-any.whl.metadata (1.6 kB)
487Collecting pytest-regressions
488  Downloading pytest_regressions-2.5.0-py3-none-any.whl.metadata (4.7 kB)
489Requirement already satisfied: pytest>=4.6 in ./micromamba/envs/pymf-docs/lib/python3.11/site-packages (from pytest-cov) (8.2.0)
490Collecting coverage>=5.2.1 (from coverage[toml]>=5.2.1->pytest-cov)
491  Downloading coverage-7.5.1-cp311-cp311-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (8.2 kB)
492Collecting ruff>=0.0.242 (from pytest-ruff)
493  Downloading ruff-0.4.3-py3-none-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (23 kB)
494Collecting pytest-datadir>=1.2.0 (from pytest-regressions)
495  Downloading pytest_datadir-1.5.0-py3-none-any.whl.metadata (2.6 kB)
496Requirement already satisfied: pyyaml in ./micromamba/envs/pymf-docs/lib/python3.11/site-packages (from pytest-regressions) (6.0.1)
497Requirement already satisfied: iniconfig in ./micromamba/envs/pymf-docs/lib/python3.11/site-packages (from pytest>=4.6->pytest-cov) (2.0.0)
498Requirement already satisfied: packaging in ./micromamba/envs/pymf-docs/lib/python3.11/site-packages (from pytest>=4.6->pytest-cov) (24.0)
499Requirement already satisfied: pluggy<2.0,>=1.5 in ./micromamba/envs/pymf-docs/lib/python3.11/site-packages (from pytest>=4.6->pytest-cov) (1.5.0)
500Downloading pytest_cov-5.0.0-py3-none-any.whl (21 kB)
501Downloading pytest_randomly-3.15.0-py3-none-any.whl (8.7 kB)
502Downloading pytest_repeat-0.9.3-py3-none-any.whl (4.2 kB)
503Downloading pytest_ruff-0.3.2-py3-none-any.whl (4.6 kB)
504Downloading pytest_regressions-2.5.0-py3-none-any.whl (23 kB)
505Downloading coverage-7.5.1-cp311-cp311-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (235 kB)
506   ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 235.6/235.6 kB 1.5 MB/s eta 0:00:00
507Downloading pytest_datadir-1.5.0-py3-none-any.whl (5.1 kB)
508Downloading ruff-0.4.3-py3-none-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (8.7 MB)
509   ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 8.7/8.7 MB 11.8 MB/s eta 0:00:00
510Installing collected packages: ruff, coverage, pytest-ruff, pytest-repeat, pytest-randomly, pytest-datadir, pytest-regressions, pytest-cov
511Successfully installed coverage-7.5.1 pytest-cov-5.0.0 pytest-datadir-1.5.0 pytest-randomly-3.15.0 pytest-regressions-2.5.0 pytest-repeat-0.9.3 pytest-ruff-0.3.2 ruff-0.4.3
512$ py.test
513============================= test session starts ==============================
514platform linux -- Python 3.11.9, pytest-8.2.0, pluggy-1.5.0 -- /builds/qt/kwant-scf/micromamba/envs/pymf-docs/bin/python3.11
515cachedir: .pytest_cache
516Using --randomly-seed=572269917
517rootdir: /builds/qt/kwant-scf
518configfile: pytest.ini
519testpaths: pymf
520plugins: randomly-3.15.0, repeat-0.9.3, cov-5.0.0, ruff-0.3.2, datadir-1.5.0, regressions-2.5.0
521collecting ... collected 63 items
522pymf/_version.py::ruff PASSED                                            [  1%]
523pymf/tb/transforms.py::ruff PASSED                                       [  3%]
524pymf/observables.py::ruff PASSED                                         [  4%]
525pymf/params/__init__.py::ruff PASSED                                     [  6%]
526pymf/kwant_helper/kwant_examples.py::ruff PASSED                         [  7%]
527pymf/solvers.py::ruff PASSED                                             [  9%]
528pymf/tb/utils.py::ruff PASSED                                            [ 11%]
529pymf/params/param_transforms.py::ruff PASSED                             [ 12%]
530pymf/tb/__init__.py::ruff PASSED                                         [ 14%]
531pymf/mf.py::ruff PASSED                                                  [ 15%]
532pymf/tb/tb.py::ruff PASSED                                               [ 17%]
533pymf/tests/test_graphene.py::ruff PASSED                                 [ 19%]
534pymf/kwant_helper/__init__.py::ruff PASSED                               [ 20%]
535pymf/kwant_helper/utils.py::ruff PASSED                                  [ 22%]
536pymf/model.py::ruff PASSED                                               [ 23%]
537pymf/__init__.py::ruff PASSED                                            [ 25%]
538pymf/params/rparams.py::ruff PASSED                                      [ 26%]
539pymf/tests/test_hat.py::ruff PASSED                                      [ 28%]
540pymf/tests/test_hubbard.py::ruff PASSED                                  [ 30%]
541pymf/tests/test_params.py::ruff PASSED                                   [ 31%]
542pymf/tests/test_tb.py::ruff PASSED                                       [ 33%]
543pymf/tests/test_zero_hint.py::ruff PASSED                                [ 34%]
544pymf/tests/test_zero_hint.py::test_zero_hint[5] PASSED                   [ 36%]
545pymf/tests/test_zero_hint.py::test_zero_hint[7] PASSED                   [ 38%]
546pymf/tests/test_zero_hint.py::test_zero_hint[8] PASSED                   [ 39%]
547pymf/tests/test_zero_hint.py::test_zero_hint[4] PASSED                   [ 41%]
548pymf/tests/test_zero_hint.py::test_zero_hint[0] PASSED                   [ 42%]
549pymf/tests/test_zero_hint.py::test_zero_hint[1] PASSED                   [ 44%]
550pymf/tests/test_zero_hint.py::test_zero_hint[3] PASSED                   [ 46%]
551pymf/tests/test_zero_hint.py::test_zero_hint[6] PASSED                   [ 47%]
552pymf/tests/test_zero_hint.py::test_zero_hint[9] PASSED                   [ 49%]
553pymf/tests/test_zero_hint.py::test_zero_hint[2] PASSED                   [ 50%]
554pymf/tests/test_graphene.py::test_gap[2] PASSED                          [ 52%]
555pymf/tests/test_graphene.py::test_gap[0] PASSED                          [ 53%]
556pymf/tests/test_graphene.py::test_gap[1] PASSED                          [ 55%]
557pymf/tests/test_graphene.py::test_gap[3] PASSED                          [ 57%]
558pymf/tests/test_graphene.py::test_gap[4] PASSED                          [ 58%]
559pymf/tests/test_hat.py::test_mexican_hat[1] PASSED                       [ 60%]
560pymf/tests/test_hat.py::test_mexican_hat[2] PASSED                       [ 61%]
561pymf/tests/test_hat.py::test_mexican_hat[0] PASSED                       [ 63%]
562pymf/tests/test_tb.py::test_fourier[1] PASSED                            [ 65%]
563pymf/tests/test_tb.py::test_fourier[0] PASSED                            [ 66%]
564pymf/tests/test_tb.py::test_fourier[5] PASSED                            [ 68%]
565pymf/tests/test_tb.py::test_fourier[3] PASSED                            [ 69%]
566pymf/tests/test_tb.py::test_fourier[9] PASSED                            [ 71%]
567pymf/tests/test_tb.py::test_fourier[4] PASSED                            [ 73%]
568pymf/tests/test_tb.py::test_fourier[8] PASSED                            [ 74%]
569pymf/tests/test_tb.py::test_fourier[6] PASSED                            [ 76%]
570pymf/tests/test_tb.py::test_fourier[7] PASSED                            [ 77%]
571pymf/tests/test_tb.py::test_fourier[2] PASSED                            [ 79%]
572pymf/tests/test_hubbard.py::test_gap_hubbard[1] PASSED                   [ 80%]
573pymf/tests/test_hubbard.py::test_gap_hubbard[2] PASSED                   [ 82%]
574pymf/tests/test_hubbard.py::test_gap_hubbard[0] PASSED                   [ 84%]
575pymf/tests/test_params.py::test_parametrisation[6] PASSED                [ 85%]
576pymf/tests/test_params.py::test_parametrisation[8] PASSED                [ 87%]
577pymf/tests/test_params.py::test_parametrisation[7] PASSED                [ 88%]
578pymf/tests/test_params.py::test_parametrisation[4] PASSED                [ 90%]
579pymf/tests/test_params.py::test_parametrisation[1] PASSED                [ 92%]
580pymf/tests/test_params.py::test_parametrisation[0] PASSED                [ 93%]
581pymf/tests/test_params.py::test_parametrisation[5] PASSED                [ 95%]
582pymf/tests/test_params.py::test_parametrisation[3] PASSED                [ 96%]
583pymf/tests/test_params.py::test_parametrisation[9] PASSED                [ 98%]
584pymf/tests/test_params.py::test_parametrisation[2] PASSED                [100%]
585-------------- generated xml file: /builds/qt/kwant-scf/junit.xml --------------
586---------- coverage: platform linux, python 3.11.9-final-0 -----------
587Name                                  Stmts   Miss  Cover
588---------------------------------------------------------
589pymf/__init__.py                         13     13     0%
590pymf/_version.py                         11     11     0%
591pymf/kwant_helper/__init__.py             0      0   100%
592pymf/kwant_helper/kwant_examples.py      18     18     0%
593pymf/kwant_helper/utils.py               74     74     0%
594pymf/mf.py                               37     37     0%
595pymf/model.py                            40     40     0%
596pymf/observables.py                       4      4     0%
597pymf/params/__init__.py                   0      0   100%
598pymf/params/param_transforms.py          30     30     0%
599pymf/params/rparams.py                    8      8     0%
600pymf/solvers.py                          21     21     0%
601pymf/tb/__init__.py                       0      0   100%
602pymf/tb/tb.py                             9      9     0%
603pymf/tb/transforms.py                    23     23     0%
604pymf/tb/utils.py                         25     25     0%
605pymf/tests/test_graphene.py              42      1    98%
606pymf/tests/test_hat.py                   36      0   100%
607pymf/tests/test_hubbard.py               23      0   100%
608pymf/tests/test_params.py                15      0   100%
609pymf/tests/test_tb.py                    20      0   100%
610pymf/tests/test_zero_hint.py             23      0   100%
611---------------------------------------------------------
612TOTAL                                   472    314    33%
613Coverage HTML written to dir htmlcov
614Coverage XML written to file coverage.xml
615======================== 63 passed in 115.97s (0:01:55) ========================
 616  Uploading artifacts for successful job  
  00:04
617Uploading artifacts...
618htmlcov: found 32 matching files and directories   
619Uploading artifacts as "archive" to coordinator... 201 Created  id=423678 responseStatus=201 Created token=glcbt-64
620Uploading artifacts...
621junit.xml: found 1 matching files and directories  
622Uploading artifacts as "junit" to coordinator... 201 Created  id=423678 responseStatus=201 Created token=glcbt-64
623Uploading artifacts...
624coverage.xml: found 1 matching files and directories 
625Uploading artifacts as "cobertura" to coordinator... 201 Created  id=423678 responseStatus=201 Created token=glcbt-64
 626  Cleaning up project directory and file based variables  
  00:03
627Job succeeded