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run pre-commit

Passed Started by
Kostas Vilkelis
@Kostas
1Running with gitlab-runner 15.4.0 (43b2dc3d)
2 on universal-tn4 d3cf9985
3 Preparing the "docker" executor 00:16
4Using Docker executor with image mambaorg/micromamba:1.4.3 ...
5Authenticating with credentials from /root/.docker/config.json
6Pulling docker image mambaorg/micromamba:1.4.3 ...
7Using docker image sha256:bcfdda4930c6becbd40d3a8eb6d835e4d2275d16767fdd5000a25507d1c56b02 for mambaorg/micromamba:1.4.3 with digest mambaorg/micromamba@sha256:25b00e28c39abc2e698943c2279fa865d0ec7c97891c7faecafb5c6417313e71 ...
8 Preparing environment 00:12
9Running on runner-d3cf9985-project-3642-concurrent-3 via tnw-tn4.tudelft.net...
10 Getting source from Git repository 00:19
11Fetching changes with git depth set to 20...
12Reinitialized existing Git repository in /builds/qt/kwant-scf/.git/
13Checking out f750ade0 as documentation...
14Removing .pre-commit-cache/
15Removing micromamba/
16Removing pymf/_version.py
17Skipping Git submodules setup
18 Restoring cache 01:00
19Checking cache for run pre-commit-non_protected...
20No URL provided, cache will not be downloaded from shared cache server. Instead a local version of cache will be extracted.
21WARNING: micromamba/pkgs/_openmp_mutex-4.5-2_gnu/lib/libgomp.so.1: chmod micromamba/pkgs/_openmp_mutex-4.5-2_gnu/lib/libgomp.so.1: no such file or directory (suppressing repeats)
22Successfully extracted cache
23 Executing "step_script" stage of the job script 00:58
24Using docker image sha256:bcfdda4930c6becbd40d3a8eb6d835e4d2275d16767fdd5000a25507d1c56b02 for mambaorg/micromamba:1.4.3 with digest mambaorg/micromamba@sha256:25b00e28c39abc2e698943c2279fa865d0ec7c97891c7faecafb5c6417313e71 ...
25$ mkdir -p micromamba
26$ export MAMBA_ROOT_PREFIX=micromamba
27$ micromamba create -yf docs/environment.yml
28 __
29 __ ______ ___ ____ _____ ___ / /_ ____ _
30 / / / / __ `__ \/ __ `/ __ `__ \/ __ \/ __ `/
31 / /_/ / / / / / / /_/ / / / / / / /_/ / /_/ /
32 / .___/_/ /_/ /_/\__,_/_/ /_/ /_/_.___/\__,_/
33 /_/
34conda-forge/linux-64 Using cache
35conda-forge/noarch Using cache
36Transaction
37 Prefix: /builds/qt/kwant-scf/micromamba/envs/pymf-docs
38 Updating specs:
39 - python=3.11
40 - kwant
41 - myst-nb
42 - numpy
43 - scipy
44 - matplotlib-base
45 - sphinx-togglebutton
46 - sphinx-copybutton
47 - pip
48 - git
49 - make
50 Package Version Build Channel Size
51──────────────────────────────────────────────────────────────────────────────────────────────────
52 Install:
53──────────────────────────────────────────────────────────────────────────────────────────────────
54 + _libgcc_mutex 0.1 conda_forge conda-forge Cached
55 + _openmp_mutex 4.5 2_gnu conda-forge Cached
56 + alabaster 0.7.16 pyhd8ed1ab_0 conda-forge Cached
57 + asttokens 2.4.1 pyhd8ed1ab_0 conda-forge Cached
58 + attrs 23.2.0 pyh71513ae_0 conda-forge Cached
59 + babel 2.14.0 pyhd8ed1ab_0 conda-forge Cached
60 + brotli 1.1.0 hd590300_1 conda-forge Cached
61 + brotli-bin 1.1.0 hd590300_1 conda-forge Cached
62 + brotli-python 1.1.0 py311hb755f60_1 conda-forge Cached
63 + bzip2 1.0.8 hd590300_5 conda-forge Cached
64 + c-ares 1.28.1 hd590300_0 conda-forge Cached
65 + ca-certificates 2024.2.2 hbcca054_0 conda-forge Cached
66 + certifi 2024.2.2 pyhd8ed1ab_0 conda-forge Cached
67 + charset-normalizer 3.3.2 pyhd8ed1ab_0 conda-forge Cached
68 + click 8.1.7 unix_pyh707e725_0 conda-forge Cached
69 + colorama 0.4.6 pyhd8ed1ab_0 conda-forge Cached
70 + comm 0.2.2 pyhd8ed1ab_0 conda-forge Cached
71 + contourpy 1.2.1 py311h9547e67_0 conda-forge Cached
72 + cycler 0.12.1 pyhd8ed1ab_0 conda-forge Cached
73 + debugpy 1.8.1 py311hb755f60_0 conda-forge Cached
74 + decorator 5.1.1 pyhd8ed1ab_0 conda-forge Cached
75 + docutils 0.21.2 pyhd8ed1ab_0 conda-forge Cached
76 + exceptiongroup 1.2.0 pyhd8ed1ab_2 conda-forge Cached
77 + executing 2.0.1 pyhd8ed1ab_0 conda-forge Cached
78 + fonttools 4.51.0 py311h459d7ec_0 conda-forge Cached
79 + freetype 2.12.1 h267a509_2 conda-forge Cached
80 + git 2.45.0 pl5321hef9f9f3_1 conda-forge Cached
81 + gmp 6.3.0 h59595ed_1 conda-forge Cached
82 + gmpy2 2.1.5 py311he48d604_0 conda-forge Cached
83 + greenlet 3.0.3 py311hb755f60_0 conda-forge Cached
84 + idna 3.7 pyhd8ed1ab_0 conda-forge Cached
85 + imagesize 1.4.1 pyhd8ed1ab_0 conda-forge Cached
86 + importlib-metadata 7.1.0 pyha770c72_0 conda-forge Cached
87 + importlib_metadata 7.1.0 hd8ed1ab_0 conda-forge Cached
88 + importlib_resources 6.4.0 pyhd8ed1ab_0 conda-forge Cached
89 + iniconfig 2.0.0 pyhd8ed1ab_0 conda-forge Cached
90 + ipykernel 6.29.3 pyhd33586a_0 conda-forge Cached
91 + ipython 8.22.2 pyh707e725_0 conda-forge Cached
92 + jedi 0.19.1 pyhd8ed1ab_0 conda-forge Cached
93 + jinja2 3.1.3 pyhd8ed1ab_0 conda-forge Cached
94 + jsonschema 4.22.0 pyhd8ed1ab_0 conda-forge Cached
95 + jsonschema-specifications 2023.12.1 pyhd8ed1ab_0 conda-forge Cached
96 + jupyter-cache 1.0.0 pyhd8ed1ab_0 conda-forge Cached
97 + jupyter_client 8.6.1 pyhd8ed1ab_0 conda-forge Cached
98 + jupyter_core 5.7.2 py311h38be061_0 conda-forge Cached
99 + keyutils 1.6.1 h166bdaf_0 conda-forge Cached
100 + kiwisolver 1.4.5 py311h9547e67_1 conda-forge Cached
101 + krb5 1.21.2 h659d440_0 conda-forge Cached
102 + kwant 1.4.4 nompi_py311hfed7191_102 conda-forge Cached
103 + lcms2 2.16 hb7c19ff_0 conda-forge Cached
104 + ld_impl_linux-64 2.40 h55db66e_0 conda-forge Cached
105 + lerc 4.0.0 h27087fc_0 conda-forge Cached
106 + libblas 3.9.0 22_linux64_openblas conda-forge Cached
107 + libbrotlicommon 1.1.0 hd590300_1 conda-forge Cached
108 + libbrotlidec 1.1.0 hd590300_1 conda-forge Cached
109 + libbrotlienc 1.1.0 hd590300_1 conda-forge Cached
110 + libcblas 3.9.0 22_linux64_openblas conda-forge Cached
111 + libcurl 8.7.1 hca28451_0 conda-forge Cached
112 + libdeflate 1.20 hd590300_0 conda-forge Cached
113 + libedit 3.1.20191231 he28a2e2_2 conda-forge Cached
114 + libev 4.33 hd590300_2 conda-forge Cached
115 + libexpat 2.6.2 h59595ed_0 conda-forge Cached
116 + libffi 3.4.2 h7f98852_5 conda-forge Cached
117 + libgcc-ng 13.2.0 h77fa898_6 conda-forge Cached
118 + libgfortran-ng 13.2.0 h69a702a_6 conda-forge Cached
119 + libgfortran5 13.2.0 h43f5ff8_6 conda-forge Cached
120 + libgomp 13.2.0 h77fa898_6 conda-forge Cached
121 + libiconv 1.17 hd590300_2 conda-forge Cached
122 + libjpeg-turbo 3.0.0 hd590300_1 conda-forge Cached
123 + liblapack 3.9.0 22_linux64_openblas conda-forge Cached
124 + libnghttp2 1.58.0 h47da74e_1 conda-forge Cached
125 + libnsl 2.0.1 hd590300_0 conda-forge Cached
126 + libopenblas 0.3.27 pthreads_h413a1c8_0 conda-forge Cached
127 + libpng 1.6.43 h2797004_0 conda-forge Cached
128 + libscotch 7.0.4 h91e35bf_1 conda-forge Cached
129 + libsodium 1.0.18 h36c2ea0_1 conda-forge Cached
130 + libsqlite 3.45.3 h2797004_0 conda-forge Cached
131 + libssh2 1.11.0 h0841786_0 conda-forge Cached
132 + libstdcxx-ng 13.2.0 hc0a3c3a_6 conda-forge Cached
133 + libtiff 4.6.0 h1dd3fc0_3 conda-forge Cached
134 + libuuid 2.38.1 h0b41bf4_0 conda-forge Cached
135 + libwebp-base 1.4.0 hd590300_0 conda-forge Cached
136 + libxcb 1.15 h0b41bf4_0 conda-forge Cached
137 + libxcrypt 4.4.36 hd590300_1 conda-forge Cached
138 + libzlib 1.2.13 hd590300_5 conda-forge Cached
139 + make 4.3 hd18ef5c_1 conda-forge Cached
140 + markdown-it-py 3.0.0 pyhd8ed1ab_0 conda-forge Cached
141 + markupsafe 2.1.5 py311h459d7ec_0 conda-forge Cached
142 + matplotlib-base 3.8.4 py311h54ef318_0 conda-forge Cached
143 + matplotlib-inline 0.1.7 pyhd8ed1ab_0 conda-forge Cached
144 + mdit-py-plugins 0.4.0 pyhd8ed1ab_0 conda-forge Cached
145 + mdurl 0.1.2 pyhd8ed1ab_0 conda-forge Cached
146 + metis 5.1.0 h59595ed_1007 conda-forge Cached
147 + mpc 1.3.1 hfe3b2da_0 conda-forge Cached
148 + mpfr 4.2.1 h9458935_1 conda-forge Cached
149 + mpmath 1.3.0 pyhd8ed1ab_0 conda-forge Cached
150 + mumps-include 5.6.2 ha770c72_4 conda-forge Cached
151 + mumps-seq 5.6.2 hfef103a_4 conda-forge Cached
152 + munkres 1.1.4 pyh9f0ad1d_0 conda-forge Cached
153 + myst-nb 1.1.0 pyhd8ed1ab_0 conda-forge Cached
154 + myst-parser 3.0.1 pyhd8ed1ab_0 conda-forge Cached
155 + nbclient 0.10.0 pyhd8ed1ab_0 conda-forge Cached
156 + nbformat 5.10.4 pyhd8ed1ab_0 conda-forge Cached
157 + ncurses 6.4.20240210 h59595ed_0 conda-forge Cached
158 + nest-asyncio 1.6.0 pyhd8ed1ab_0 conda-forge Cached
159 + numpy 1.26.4 py311h64a7726_0 conda-forge Cached
160 + openjpeg 2.5.2 h488ebb8_0 conda-forge Cached
161 + openssl 3.3.0 hd590300_0 conda-forge Cached
162 + packaging 24.0 pyhd8ed1ab_0 conda-forge Cached
163 + parso 0.8.4 pyhd8ed1ab_0 conda-forge Cached
164 + pcre2 10.43 hcad00b1_0 conda-forge Cached
165 + perl 5.32.1 7_hd590300_perl5 conda-forge Cached
166 + pexpect 4.9.0 pyhd8ed1ab_0 conda-forge Cached
167 + pickleshare 0.7.5 py_1003 conda-forge Cached
168 + pillow 10.3.0 py311h18e6fac_0 conda-forge Cached
169 + pip 24.0 pyhd8ed1ab_0 conda-forge Cached
170 + pkgutil-resolve-name 1.3.10 pyhd8ed1ab_1 conda-forge Cached
171 + platformdirs 4.2.1 pyhd8ed1ab_0 conda-forge Cached
172 + pluggy 1.5.0 pyhd8ed1ab_0 conda-forge Cached
173 + prompt-toolkit 3.0.42 pyha770c72_0 conda-forge Cached
174 + psutil 5.9.8 py311h459d7ec_0 conda-forge Cached
175 + pthread-stubs 0.4 h36c2ea0_1001 conda-forge Cached
176 + ptyprocess 0.7.0 pyhd3deb0d_0 conda-forge Cached
177 + pure_eval 0.2.2 pyhd8ed1ab_0 conda-forge Cached
178 + pygments 2.18.0 pyhd8ed1ab_0 conda-forge Cached
179 + pyparsing 3.1.2 pyhd8ed1ab_0 conda-forge Cached
180 + pysocks 1.7.1 pyha2e5f31_6 conda-forge Cached
181 + pytest 8.2.0 pyhd8ed1ab_0 conda-forge Cached
182 + python 3.11.9 hb806964_0_cpython conda-forge Cached
183 + python-dateutil 2.9.0 pyhd8ed1ab_0 conda-forge Cached
184 + python-fastjsonschema 2.19.1 pyhd8ed1ab_0 conda-forge Cached
185 + python_abi 3.11 4_cp311 conda-forge Cached
186 + pytz 2024.1 pyhd8ed1ab_0 conda-forge Cached
187 + pyyaml 6.0.1 py311h459d7ec_1 conda-forge Cached
188 + pyzmq 26.0.2 py311h08a0b41_0 conda-forge Cached
189 + qsymm 1.4.0 pyhd8ed1ab_0 conda-forge Cached
190 + readline 8.2 h8228510_1 conda-forge Cached
191 + referencing 0.35.1 pyhd8ed1ab_0 conda-forge Cached
192 + requests 2.31.0 pyhd8ed1ab_0 conda-forge Cached
193 + rpds-py 0.18.0 py311h46250e7_0 conda-forge Cached
194 + scipy 1.13.0 py311h517d4fd_1 conda-forge Cached
195 + scotch 7.0.4 h23d43cc_1 conda-forge Cached
196 + setuptools 69.5.1 pyhd8ed1ab_0 conda-forge Cached
197 + six 1.16.0 pyh6c4a22f_0 conda-forge Cached
198 + snowballstemmer 2.2.0 pyhd8ed1ab_0 conda-forge Cached
199 + sphinx 7.3.7 pyhd8ed1ab_0 conda-forge Cached
200 + sphinx-copybutton 0.5.2 pyhd8ed1ab_0 conda-forge Cached
201 + sphinx-togglebutton 0.3.2 pyhd8ed1ab_0 conda-forge Cached
202 + sphinxcontrib-applehelp 1.0.8 pyhd8ed1ab_0 conda-forge Cached
203 + sphinxcontrib-devhelp 1.0.6 pyhd8ed1ab_0 conda-forge Cached
204 + sphinxcontrib-htmlhelp 2.0.5 pyhd8ed1ab_0 conda-forge Cached
205 + sphinxcontrib-jsmath 1.0.1 pyhd8ed1ab_0 conda-forge Cached
206 + sphinxcontrib-qthelp 1.0.7 pyhd8ed1ab_0 conda-forge Cached
207 + sphinxcontrib-serializinghtml 1.1.10 pyhd8ed1ab_0 conda-forge Cached
208 + sqlalchemy 2.0.30 py311h331c9d8_0 conda-forge Cached
209 + stack_data 0.6.2 pyhd8ed1ab_0 conda-forge Cached
210 + sympy 1.12 pypyh9d50eac_103 conda-forge Cached
211 + tabulate 0.9.0 pyhd8ed1ab_1 conda-forge Cached
212 + tinyarray 1.2.4 py311h320fe9a_3 conda-forge Cached
213 + tk 8.6.13 noxft_h4845f30_101 conda-forge Cached
214 + tomli 2.0.1 pyhd8ed1ab_0 conda-forge Cached
215 + tornado 6.4 py311h459d7ec_0 conda-forge Cached
216 + traitlets 5.14.3 pyhd8ed1ab_0 conda-forge Cached
217 + typing-extensions 4.11.0 hd8ed1ab_0 conda-forge Cached
218 + typing_extensions 4.11.0 pyha770c72_0 conda-forge Cached
219 + tzdata 2024a h0c530f3_0 conda-forge Cached
220 + urllib3 2.2.1 pyhd8ed1ab_0 conda-forge Cached
221 + wcwidth 0.2.13 pyhd8ed1ab_0 conda-forge Cached
222 + wheel 0.43.0 pyhd8ed1ab_1 conda-forge Cached
223 + xorg-libxau 1.0.11 hd590300_0 conda-forge Cached
224 + xorg-libxdmcp 1.1.3 h7f98852_0 conda-forge Cached
225 + xz 5.2.6 h166bdaf_0 conda-forge Cached
226 + yaml 0.2.5 h7f98852_2 conda-forge Cached
227 + zeromq 4.3.5 h75354e8_3 conda-forge Cached
228 + zipp 3.17.0 pyhd8ed1ab_0 conda-forge Cached
229 + zlib 1.2.13 hd590300_5 conda-forge Cached
230 + zstd 1.5.6 ha6fb4c9_0 conda-forge Cached
231 Summary:
232 Install: 177 packages
233 Total download: 0 B
234──────────────────────────────────────────────────────────────────────────────────────────────────
235Transaction starting
236Linking python_abi-3.11-4_cp311
237Linking ca-certificates-2024.2.2-hbcca054_0
238Linking mumps-include-5.6.2-ha770c72_4
239Linking _libgcc_mutex-0.1-conda_forge
240Linking libstdcxx-ng-13.2.0-hc0a3c3a_6
241Linking ld_impl_linux-64-2.40-h55db66e_0
242Linking libgomp-13.2.0-h77fa898_6
243Linking _openmp_mutex-4.5-2_gnu
244Linking libgcc-ng-13.2.0-h77fa898_6
245Linking xorg-libxdmcp-1.1.3-h7f98852_0
246Linking pthread-stubs-0.4-h36c2ea0_1001
247Linking libsodium-1.0.18-h36c2ea0_1
248Linking c-ares-1.28.1-hd590300_0
249Linking libev-4.33-hd590300_2
250Linking gmp-6.3.0-h59595ed_1
251Linking metis-5.1.0-h59595ed_1007
252Linking libwebp-base-1.4.0-hd590300_0
253Linking libbrotlicommon-1.1.0-hd590300_1
254Linking libiconv-1.17-hd590300_2
255Linking libdeflate-1.20-hd590300_0
256Linking lerc-4.0.0-h27087fc_0
257Linking libjpeg-turbo-3.0.0-hd590300_1
258Linking xorg-libxau-1.0.11-hd590300_0
259Linking libxcrypt-4.4.36-hd590300_1
260Linking libzlib-1.2.13-hd590300_5
261Linking libffi-3.4.2-h7f98852_5
262Linking bzip2-1.0.8-hd590300_5
263Linking yaml-0.2.5-h7f98852_2
264Linking libgfortran5-13.2.0-h43f5ff8_6
265Linking make-4.3-hd18ef5c_1
266Linking keyutils-1.6.1-h166bdaf_0
267Linking openssl-3.3.0-hd590300_0
268Linking ncurses-6.4.20240210-h59595ed_0
269Linking libuuid-2.38.1-h0b41bf4_0
270Linking libnsl-2.0.1-hd590300_0
271Linking libexpat-2.6.2-h59595ed_0
272Linking xz-5.2.6-h166bdaf_0
273Linking mpfr-4.2.1-h9458935_1
274Linking libbrotlienc-1.1.0-hd590300_1
275Linking libbrotlidec-1.1.0-hd590300_1
276Linking libxcb-1.15-h0b41bf4_0
277Linking perl-5.32.1-7_hd590300_perl5
278Linking zlib-1.2.13-hd590300_5
279Linking zstd-1.5.6-ha6fb4c9_0
280Linking libpng-1.6.43-h2797004_0
281Linking tk-8.6.13-noxft_h4845f30_101
282Linking libsqlite-3.45.3-h2797004_0
283Linking pcre2-10.43-hcad00b1_0
284Linking libgfortran-ng-13.2.0-h69a702a_6
285Linking libnghttp2-1.58.0-h47da74e_1
286Linking libssh2-1.11.0-h0841786_0
287Linking libedit-3.1.20191231-he28a2e2_2
288Linking readline-8.2-h8228510_1
289Linking mpc-1.3.1-hfe3b2da_0
290Linking brotli-bin-1.1.0-hd590300_1
291Linking libtiff-4.6.0-h1dd3fc0_3
292Linking freetype-2.12.1-h267a509_2
293Linking libscotch-7.0.4-h91e35bf_1
294Linking libopenblas-0.3.27-pthreads_h413a1c8_0
295Linking krb5-1.21.2-h659d440_0
296Linking brotli-1.1.0-hd590300_1
297Linking openjpeg-2.5.2-h488ebb8_0
298Linking lcms2-2.16-hb7c19ff_0
299Linking scotch-7.0.4-h23d43cc_1
300Linking libblas-3.9.0-22_linux64_openblas
301Linking zeromq-4.3.5-h75354e8_3
302Linking libcurl-8.7.1-hca28451_0
303Linking libcblas-3.9.0-22_linux64_openblas
304Linking liblapack-3.9.0-22_linux64_openblas
305Linking git-2.45.0-pl5321hef9f9f3_1
306Linking mumps-seq-5.6.2-hfef103a_4
307Linking tzdata-2024a-h0c530f3_0
308Linking python-3.11.9-hb806964_0_cpython
309Linking wheel-0.43.0-pyhd8ed1ab_1
310Linking setuptools-69.5.1-pyhd8ed1ab_0
311Linking pip-24.0-pyhd8ed1ab_0
312Linking sphinxcontrib-jsmath-1.0.1-pyhd8ed1ab_0
313Linking parso-0.8.4-pyhd8ed1ab_0
314Linking pkgutil-resolve-name-1.3.10-pyhd8ed1ab_1
315Linking python-fastjsonschema-2.19.1-pyhd8ed1ab_0
316Linking ptyprocess-0.7.0-pyhd3deb0d_0
317Linking wcwidth-0.2.13-pyhd8ed1ab_0
318Linking iniconfig-2.0.0-pyhd8ed1ab_0
319Linking six-1.16.0-pyh6c4a22f_0
320Linking pure_eval-0.2.2-pyhd8ed1ab_0
321Linking executing-2.0.1-pyhd8ed1ab_0
322Linking mpmath-1.3.0-pyhd8ed1ab_0
323Linking munkres-1.1.4-pyh9f0ad1d_0
324Linking platformdirs-4.2.1-pyhd8ed1ab_0
325Linking pluggy-1.5.0-pyhd8ed1ab_0
326Linking pyparsing-3.1.2-pyhd8ed1ab_0
327Linking cycler-0.12.1-pyhd8ed1ab_0
328Linking pytz-2024.1-pyhd8ed1ab_0
329Linking zipp-3.17.0-pyhd8ed1ab_0
330Linking nest-asyncio-1.6.0-pyhd8ed1ab_0
331Linking traitlets-5.14.3-pyhd8ed1ab_0
332Linking exceptiongroup-1.2.0-pyhd8ed1ab_2
333Linking decorator-5.1.1-pyhd8ed1ab_0
334Linking tabulate-0.9.0-pyhd8ed1ab_1
335Linking click-8.1.7-unix_pyh707e725_0
336Linking attrs-23.2.0-pyh71513ae_0
337Linking mdurl-0.1.2-pyhd8ed1ab_0
338Linking typing_extensions-4.11.0-pyha770c72_0
339Linking pickleshare-0.7.5-py_1003
340Linking charset-normalizer-3.3.2-pyhd8ed1ab_0
341Linking pysocks-1.7.1-pyha2e5f31_6
342Linking idna-3.7-pyhd8ed1ab_0
343Linking certifi-2024.2.2-pyhd8ed1ab_0
344Linking pygments-2.18.0-pyhd8ed1ab_0
345Linking alabaster-0.7.16-pyhd8ed1ab_0
346Linking tomli-2.0.1-pyhd8ed1ab_0
347Linking snowballstemmer-2.2.0-pyhd8ed1ab_0
348Linking packaging-24.0-pyhd8ed1ab_0
349Linking imagesize-1.4.1-pyhd8ed1ab_0
350Linking colorama-0.4.6-pyhd8ed1ab_0
351Linking docutils-0.21.2-pyhd8ed1ab_0
352Linking jedi-0.19.1-pyhd8ed1ab_0
353Linking pexpect-4.9.0-pyhd8ed1ab_0
354Linking prompt-toolkit-3.0.42-pyha770c72_0
355Linking asttokens-2.4.1-pyhd8ed1ab_0
356Linking python-dateutil-2.9.0-pyhd8ed1ab_0
357Linking babel-2.14.0-pyhd8ed1ab_0
358Linking importlib_resources-6.4.0-pyhd8ed1ab_0
359Linking importlib-metadata-7.1.0-pyha770c72_0
360Linking comm-0.2.2-pyhd8ed1ab_0
361Linking matplotlib-inline-0.1.7-pyhd8ed1ab_0
362Linking markdown-it-py-3.0.0-pyhd8ed1ab_0
363Linking typing-extensions-4.11.0-hd8ed1ab_0
364Linking pytest-8.2.0-pyhd8ed1ab_0
365Linking stack_data-0.6.2-pyhd8ed1ab_0
366Linking importlib_metadata-7.1.0-hd8ed1ab_0
367Linking mdit-py-plugins-0.4.0-pyhd8ed1ab_0
368Linking ipython-8.22.2-pyh707e725_0
369Linking rpds-py-0.18.0-py311h46250e7_0
370Linking gmpy2-2.1.5-py311he48d604_0
371Linking brotli-python-1.1.0-py311hb755f60_1
372Linking tinyarray-1.2.4-py311h320fe9a_3
373Linking pillow-10.3.0-py311h18e6fac_0
374Linking kiwisolver-1.4.5-py311h9547e67_1
375Linking greenlet-3.0.3-py311hb755f60_0
376Linking debugpy-1.8.1-py311hb755f60_0
377Linking tornado-6.4-py311h459d7ec_0
378Linking pyzmq-26.0.2-py311h08a0b41_0
379Linking psutil-5.9.8-py311h459d7ec_0
380Linking markupsafe-2.1.5-py311h459d7ec_0
381Linking pyyaml-6.0.1-py311h459d7ec_1
382Linking numpy-1.26.4-py311h64a7726_0
383Linking fonttools-4.51.0-py311h459d7ec_0
384Linking jupyter_core-5.7.2-py311h38be061_0
385Linking sqlalchemy-2.0.30-py311h331c9d8_0
386Linking contourpy-1.2.1-py311h9547e67_0
387Linking scipy-1.13.0-py311h517d4fd_1
388Linking matplotlib-base-3.8.4-py311h54ef318_0
389Linking referencing-0.35.1-pyhd8ed1ab_0
390Linking sympy-1.12-pypyh9d50eac_103
391Linking urllib3-2.2.1-pyhd8ed1ab_0
392Linking jinja2-3.1.3-pyhd8ed1ab_0
393Linking jupyter_client-8.6.1-pyhd8ed1ab_0
394Linking jsonschema-specifications-2023.12.1-pyhd8ed1ab_0
395Linking qsymm-1.4.0-pyhd8ed1ab_0
396Linking requests-2.31.0-pyhd8ed1ab_0
397Linking ipykernel-6.29.3-pyhd33586a_0
398Linking jsonschema-4.22.0-pyhd8ed1ab_0
399Linking sphinx-7.3.7-pyhd8ed1ab_0
400Linking sphinxcontrib-applehelp-1.0.8-pyhd8ed1ab_0
401Linking nbformat-5.10.4-pyhd8ed1ab_0
402Linking sphinxcontrib-devhelp-1.0.6-pyhd8ed1ab_0
403Linking nbclient-0.10.0-pyhd8ed1ab_0
404Linking sphinxcontrib-qthelp-1.0.7-pyhd8ed1ab_0
405Linking jupyter-cache-1.0.0-pyhd8ed1ab_0
406Linking sphinxcontrib-htmlhelp-2.0.5-pyhd8ed1ab_0
407Linking sphinxcontrib-serializinghtml-1.1.10-pyhd8ed1ab_0
408Linking myst-parser-3.0.1-pyhd8ed1ab_0
409Linking sphinx-copybutton-0.5.2-pyhd8ed1ab_0
410Linking sphinx-togglebutton-0.3.2-pyhd8ed1ab_0
411Linking myst-nb-1.1.0-pyhd8ed1ab_0
412Linking kwant-1.4.4-nompi_py311hfed7191_102
413Transaction finished
414To activate this environment, use:
415 micromamba activate pymf-docs
416Or to execute a single command in this environment, use:
417 micromamba run -n pymf-docs mycommand
418Installing pip packages: sphinx-book-theme>=1.1.0, sphinx-tippy, ..
419Processing /builds/qt/kwant-scf
420 Installing build dependencies: started
421 Installing build dependencies: finished with status 'done'
422 Getting requirements to build wheel: started
423 Getting requirements to build wheel: finished with status 'done'
424 Preparing metadata (pyproject.toml): started
425 Preparing metadata (pyproject.toml): finished with status 'done'
426Collecting sphinx-book-theme>=1.1.0 (from -r /builds/qt/kwant-scf/docs/mambafBaOC0oG7TD (line 1))
427 Downloading sphinx_book_theme-1.1.2-py3-none-any.whl.metadata (5.7 kB)
428Collecting sphinx-tippy (from -r /builds/qt/kwant-scf/docs/mambafBaOC0oG7TD (line 2))
429 Downloading sphinx_tippy-0.4.3-py3-none-any.whl.metadata (1.2 kB)
430Requirement already satisfied: sphinx>=5 in /builds/qt/kwant-scf/micromamba/envs/pymf-docs/lib/python3.11/site-packages (from sphinx-book-theme>=1.1.0->-r /builds/qt/kwant-scf/docs/mambafBaOC0oG7TD (line 1)) (7.3.7)
431Collecting pydata-sphinx-theme>=0.14 (from sphinx-book-theme>=1.1.0->-r /builds/qt/kwant-scf/docs/mambafBaOC0oG7TD (line 1))
432 Downloading pydata_sphinx_theme-0.15.2-py3-none-any.whl.metadata (7.3 kB)
433Collecting beautifulsoup4 (from sphinx-tippy->-r /builds/qt/kwant-scf/docs/mambafBaOC0oG7TD (line 2))
434 Downloading beautifulsoup4-4.12.3-py3-none-any.whl.metadata (3.8 kB)
435Requirement already satisfied: jinja2 in /builds/qt/kwant-scf/micromamba/envs/pymf-docs/lib/python3.11/site-packages (from sphinx-tippy->-r /builds/qt/kwant-scf/docs/mambafBaOC0oG7TD (line 2)) (3.1.3)
436Requirement already satisfied: requests in /builds/qt/kwant-scf/micromamba/envs/pymf-docs/lib/python3.11/site-packages (from sphinx-tippy->-r /builds/qt/kwant-scf/docs/mambafBaOC0oG7TD (line 2)) (2.31.0)
437Requirement already satisfied: numpy>=1.23 in /builds/qt/kwant-scf/micromamba/envs/pymf-docs/lib/python3.11/site-packages (from pymf==0.1.dev59+gf750ade->-r /builds/qt/kwant-scf/docs/mambafBaOC0oG7TD (line 3)) (1.26.4)
438Requirement already satisfied: packaging>=22.0 in /builds/qt/kwant-scf/micromamba/envs/pymf-docs/lib/python3.11/site-packages (from pymf==0.1.dev59+gf750ade->-r /builds/qt/kwant-scf/docs/mambafBaOC0oG7TD (line 3)) (24.0)
439Requirement already satisfied: scipy>=1.8 in /builds/qt/kwant-scf/micromamba/envs/pymf-docs/lib/python3.11/site-packages (from pymf==0.1.dev59+gf750ade->-r /builds/qt/kwant-scf/docs/mambafBaOC0oG7TD (line 3)) (1.13.0)
440Requirement already satisfied: docutils!=0.17.0 in /builds/qt/kwant-scf/micromamba/envs/pymf-docs/lib/python3.11/site-packages (from pydata-sphinx-theme>=0.14->sphinx-book-theme>=1.1.0->-r /builds/qt/kwant-scf/docs/mambafBaOC0oG7TD (line 1)) (0.21.2)
441Requirement already satisfied: Babel in /builds/qt/kwant-scf/micromamba/envs/pymf-docs/lib/python3.11/site-packages (from pydata-sphinx-theme>=0.14->sphinx-book-theme>=1.1.0->-r /builds/qt/kwant-scf/docs/mambafBaOC0oG7TD (line 1)) (2.14.0)
442Requirement already satisfied: pygments>=2.7 in /builds/qt/kwant-scf/micromamba/envs/pymf-docs/lib/python3.11/site-packages (from pydata-sphinx-theme>=0.14->sphinx-book-theme>=1.1.0->-r /builds/qt/kwant-scf/docs/mambafBaOC0oG7TD (line 1)) (2.18.0)
443Collecting accessible-pygments (from pydata-sphinx-theme>=0.14->sphinx-book-theme>=1.1.0->-r /builds/qt/kwant-scf/docs/mambafBaOC0oG7TD (line 1))
444 Downloading accessible_pygments-0.0.4-py2.py3-none-any.whl.metadata (6.0 kB)
445Requirement already satisfied: typing-extensions in /builds/qt/kwant-scf/micromamba/envs/pymf-docs/lib/python3.11/site-packages (from pydata-sphinx-theme>=0.14->sphinx-book-theme>=1.1.0->-r /builds/qt/kwant-scf/docs/mambafBaOC0oG7TD (line 1)) (4.11.0)
446Requirement already satisfied: sphinxcontrib-applehelp in /builds/qt/kwant-scf/micromamba/envs/pymf-docs/lib/python3.11/site-packages (from sphinx>=5->sphinx-book-theme>=1.1.0->-r /builds/qt/kwant-scf/docs/mambafBaOC0oG7TD (line 1)) (1.0.8)
447Requirement already satisfied: sphinxcontrib-devhelp in /builds/qt/kwant-scf/micromamba/envs/pymf-docs/lib/python3.11/site-packages (from sphinx>=5->sphinx-book-theme>=1.1.0->-r /builds/qt/kwant-scf/docs/mambafBaOC0oG7TD (line 1)) (1.0.6)
448Requirement already satisfied: sphinxcontrib-jsmath in /builds/qt/kwant-scf/micromamba/envs/pymf-docs/lib/python3.11/site-packages (from sphinx>=5->sphinx-book-theme>=1.1.0->-r /builds/qt/kwant-scf/docs/mambafBaOC0oG7TD (line 1)) (1.0.1)
449Requirement already satisfied: sphinxcontrib-htmlhelp>=2.0.0 in /builds/qt/kwant-scf/micromamba/envs/pymf-docs/lib/python3.11/site-packages (from sphinx>=5->sphinx-book-theme>=1.1.0->-r /builds/qt/kwant-scf/docs/mambafBaOC0oG7TD (line 1)) (2.0.5)
450Requirement already satisfied: sphinxcontrib-serializinghtml>=1.1.9 in /builds/qt/kwant-scf/micromamba/envs/pymf-docs/lib/python3.11/site-packages (from sphinx>=5->sphinx-book-theme>=1.1.0->-r /builds/qt/kwant-scf/docs/mambafBaOC0oG7TD (line 1)) (1.1.10)
451Requirement already satisfied: sphinxcontrib-qthelp in /builds/qt/kwant-scf/micromamba/envs/pymf-docs/lib/python3.11/site-packages (from sphinx>=5->sphinx-book-theme>=1.1.0->-r /builds/qt/kwant-scf/docs/mambafBaOC0oG7TD (line 1)) (1.0.7)
452Requirement already satisfied: snowballstemmer>=2.0 in /builds/qt/kwant-scf/micromamba/envs/pymf-docs/lib/python3.11/site-packages (from sphinx>=5->sphinx-book-theme>=1.1.0->-r /builds/qt/kwant-scf/docs/mambafBaOC0oG7TD (line 1)) (2.2.0)
453Requirement already satisfied: alabaster~=0.7.14 in /builds/qt/kwant-scf/micromamba/envs/pymf-docs/lib/python3.11/site-packages (from sphinx>=5->sphinx-book-theme>=1.1.0->-r /builds/qt/kwant-scf/docs/mambafBaOC0oG7TD (line 1)) (0.7.16)
454Requirement already satisfied: imagesize>=1.3 in /builds/qt/kwant-scf/micromamba/envs/pymf-docs/lib/python3.11/site-packages (from sphinx>=5->sphinx-book-theme>=1.1.0->-r /builds/qt/kwant-scf/docs/mambafBaOC0oG7TD (line 1)) (1.4.1)
455Requirement already satisfied: MarkupSafe>=2.0 in /builds/qt/kwant-scf/micromamba/envs/pymf-docs/lib/python3.11/site-packages (from jinja2->sphinx-tippy->-r /builds/qt/kwant-scf/docs/mambafBaOC0oG7TD (line 2)) (2.1.5)
456Requirement already satisfied: charset-normalizer<4,>=2 in /builds/qt/kwant-scf/micromamba/envs/pymf-docs/lib/python3.11/site-packages (from requests->sphinx-tippy->-r /builds/qt/kwant-scf/docs/mambafBaOC0oG7TD (line 2)) (3.3.2)
457Requirement already satisfied: idna<4,>=2.5 in /builds/qt/kwant-scf/micromamba/envs/pymf-docs/lib/python3.11/site-packages (from requests->sphinx-tippy->-r /builds/qt/kwant-scf/docs/mambafBaOC0oG7TD (line 2)) (3.7)
458Requirement already satisfied: urllib3<3,>=1.21.1 in /builds/qt/kwant-scf/micromamba/envs/pymf-docs/lib/python3.11/site-packages (from requests->sphinx-tippy->-r /builds/qt/kwant-scf/docs/mambafBaOC0oG7TD (line 2)) (2.2.1)
459Requirement already satisfied: certifi>=2017.4.17 in /builds/qt/kwant-scf/micromamba/envs/pymf-docs/lib/python3.11/site-packages (from requests->sphinx-tippy->-r /builds/qt/kwant-scf/docs/mambafBaOC0oG7TD (line 2)) (2024.2.2)
460Collecting soupsieve>1.2 (from beautifulsoup4->sphinx-tippy->-r /builds/qt/kwant-scf/docs/mambafBaOC0oG7TD (line 2))
461 Downloading soupsieve-2.5-py3-none-any.whl.metadata (4.7 kB)
462Downloading sphinx_book_theme-1.1.2-py3-none-any.whl (400 kB)
463 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 400.8/400.8 kB 8.2 MB/s eta 0:00:00
464Downloading sphinx_tippy-0.4.3-py3-none-any.whl (10.0 kB)
465Downloading pydata_sphinx_theme-0.15.2-py3-none-any.whl (4.5 MB)
466 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 4.5/4.5 MB 46.1 MB/s eta 0:00:00
467Downloading beautifulsoup4-4.12.3-py3-none-any.whl (147 kB)
468 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 147.9/147.9 kB 4.6 MB/s eta 0:00:00
469Downloading soupsieve-2.5-py3-none-any.whl (36 kB)
470Downloading accessible_pygments-0.0.4-py2.py3-none-any.whl (29 kB)
471Building wheels for collected packages: pymf
472 Building wheel for pymf (pyproject.toml): started
473 Building wheel for pymf (pyproject.toml): finished with status 'done'
474 Created wheel for pymf: filename=pymf-0.1.dev59+gf750ade-py3-none-any.whl size=17188 sha256=4d15b17bb1b5943b57c20bd4b1d53bbe25704d147e282bba28d96313ec8da907
475 Stored in directory: /home/mambauser/.cache/pip/wheels/5b/06/10/8869722029570f6f33627b817da751714f487bfb77cdb04f2f
476Successfully built pymf
477Installing collected packages: soupsieve, accessible-pygments, pymf, beautifulsoup4, sphinx-tippy, pydata-sphinx-theme, sphinx-book-theme
478Successfully installed accessible-pygments-0.0.4 beautifulsoup4-4.12.3 pydata-sphinx-theme-0.15.2 pymf-0.1.dev59+gf750ade soupsieve-2.5 sphinx-book-theme-1.1.2 sphinx-tippy-0.4.3
479$ eval "$(micromamba shell hook --shell bash)"
480$ micromamba activate pymf-docs
481$ micromamba install -c conda-forge -y mamba pip pre-commit git
482 __
483 __ ______ ___ ____ _____ ___ / /_ ____ _
484 / / / / __ `__ \/ __ `/ __ `__ \/ __ \/ __ `/
485 / /_/ / / / / / / /_/ / / / / / / /_/ / /_/ /
486 / .___/_/ /_/ /_/\__,_/_/ /_/ /_/_.___/\__,_/
487 /_/
488conda-forge/linux-64 Using cache
489conda-forge/noarch Using cache
490Pinned packages:
491 - python 3.11.*
492Transaction
493 Prefix: /builds/qt/kwant-scf/micromamba/envs/pymf-docs
494 Updating specs:
495 - mamba
496 - pip
497 - pre-commit
498 - git
499 Package Version Build Channel Size
500────────────────────────────────────────────────────────────────────────────────────
501 Install:
502────────────────────────────────────────────────────────────────────────────────────
503 + archspec 0.2.3 pyhd8ed1ab_0 conda-forge Cached
504 + boltons 24.0.0 pyhd8ed1ab_0 conda-forge Cached
505 + cffi 1.16.0 py311hb3a22ac_0 conda-forge Cached
506 + cfgv 3.3.1 pyhd8ed1ab_0 conda-forge Cached
507 + conda 24.4.0 py311h38be061_0 conda-forge Cached
508 + conda-libmamba-solver 24.1.0 pyhd8ed1ab_0 conda-forge Cached
509 + conda-package-handling 2.2.0 pyh38be061_0 conda-forge Cached
510 + conda-package-streaming 0.9.0 pyhd8ed1ab_0 conda-forge Cached
511 + distlib 0.3.8 pyhd8ed1ab_0 conda-forge Cached
512 + distro 1.9.0 pyhd8ed1ab_0 conda-forge Cached
513 + filelock 3.14.0 pyhd8ed1ab_0 conda-forge Cached
514 + fmt 10.2.1 h00ab1b0_0 conda-forge Cached
515 + icu 73.2 h59595ed_0 conda-forge Cached
516 + identify 2.5.36 pyhd8ed1ab_0 conda-forge Cached
517 + jsonpatch 1.33 pyhd8ed1ab_0 conda-forge Cached
518 + jsonpointer 2.4 py311h38be061_3 conda-forge Cached
519 + libarchive 3.7.2 h2aa1ff5_1 conda-forge Cached
520 + libmamba 1.5.8 had39da4_0 conda-forge Cached
521 + libmambapy 1.5.8 py311hf2555c7_0 conda-forge Cached
522 + libsolv 0.7.29 ha6fb4c9_0 conda-forge Cached
523 + libxml2 2.12.6 h232c23b_2 conda-forge Cached
524 + lz4-c 1.9.4 hcb278e6_0 conda-forge Cached
525 + lzo 2.10 hd590300_1001 conda-forge Cached
526 + mamba 1.5.8 py311h3072747_0 conda-forge Cached
527 + menuinst 2.0.2 py311h38be061_0 conda-forge Cached
528 + nodeenv 1.8.0 pyhd8ed1ab_0 conda-forge Cached
529 + pre-commit 3.7.0 pyha770c72_0 conda-forge Cached
530 + pybind11-abi 4 hd8ed1ab_3 conda-forge Cached
531 + pycosat 0.6.6 py311h459d7ec_0 conda-forge Cached
532 + pycparser 2.22 pyhd8ed1ab_0 conda-forge Cached
533 + reproc 14.2.4.post0 hd590300_1 conda-forge Cached
534 + reproc-cpp 14.2.4.post0 h59595ed_1 conda-forge Cached
535 + ruamel.yaml 0.18.6 py311h459d7ec_0 conda-forge Cached
536 + ruamel.yaml.clib 0.2.8 py311h459d7ec_0 conda-forge Cached
537 + tqdm 4.66.4 pyhd8ed1ab_0 conda-forge Cached
538 + truststore 0.8.0 pyhd8ed1ab_0 conda-forge Cached
539 + ukkonen 1.0.1 py311h9547e67_4 conda-forge Cached
540 + virtualenv 20.26.1 pyhd8ed1ab_0 conda-forge Cached
541 + yaml-cpp 0.8.0 h59595ed_0 conda-forge Cached
542 + zstandard 0.19.0 py311hd4cff14_0 conda-forge Cached
543 Summary:
544 Install: 40 packages
545 Total download: 0 B
546────────────────────────────────────────────────────────────────────────────────────
547Transaction starting
548Linking fmt-10.2.1-h00ab1b0_0
549Linking yaml-cpp-0.8.0-h59595ed_0
550Linking reproc-14.2.4.post0-hd590300_1
551Linking libsolv-0.7.29-ha6fb4c9_0
552Linking lz4-c-1.9.4-hcb278e6_0
553Linking lzo-2.10-hd590300_1001
554Linking icu-73.2-h59595ed_0
555Linking pycosat-0.6.6-py311h459d7ec_0
556Linking menuinst-2.0.2-py311h38be061_0
557Linking jsonpointer-2.4-py311h38be061_3
558Linking ruamel.yaml.clib-0.2.8-py311h459d7ec_0
559Linking reproc-cpp-14.2.4.post0-h59595ed_1
560Linking libxml2-2.12.6-h232c23b_2
561Linking ruamel.yaml-0.18.6-py311h459d7ec_0
562Linking libarchive-3.7.2-h2aa1ff5_1
563Linking libmamba-1.5.8-had39da4_0
564Linking cfgv-3.3.1-pyhd8ed1ab_0
565Linking nodeenv-1.8.0-pyhd8ed1ab_0
566Linking archspec-0.2.3-pyhd8ed1ab_0
567Linking truststore-0.8.0-pyhd8ed1ab_0
568Linking pybind11-abi-4-hd8ed1ab_3
569Linking tqdm-4.66.4-pyhd8ed1ab_0
570Linking distro-1.9.0-pyhd8ed1ab_0
571Linking boltons-24.0.0-pyhd8ed1ab_0
572Linking pycparser-2.22-pyhd8ed1ab_0
573Linking distlib-0.3.8-pyhd8ed1ab_0
574Linking filelock-3.14.0-pyhd8ed1ab_0
575Linking jsonpatch-1.33-pyhd8ed1ab_0
576Linking virtualenv-20.26.1-pyhd8ed1ab_0
577Linking libmambapy-1.5.8-py311hf2555c7_0
578Linking cffi-1.16.0-py311hb3a22ac_0
579Linking zstandard-0.19.0-py311hd4cff14_0
580Linking ukkonen-1.0.1-py311h9547e67_4
581Linking conda-package-streaming-0.9.0-pyhd8ed1ab_0
582Linking identify-2.5.36-pyhd8ed1ab_0
583Linking conda-package-handling-2.2.0-pyh38be061_0
584Linking pre-commit-3.7.0-pyha770c72_0
585Linking conda-24.4.0-py311h38be061_0
586Linking conda-libmamba-solver-24.1.0-pyhd8ed1ab_0
587Linking mamba-1.5.8-py311h3072747_0
588Transaction finished
589To activate this environment, use:
590 micromamba activate pymf-docs
591Or to execute a single command in this environment, use:
592 micromamba run -n pymf-docs mycommand
593$ git config --global --add safe.directory $CI_PROJECT_DIR
594$ pre-commit run --all-files
595trim trailing whitespace.................................................Passed
596fix end of files.........................................................Passed
597black....................................................................Passed
598codespell................................................................Passed
599 Saving cache for successful job 02:10
600Creating cache run pre-commit-non_protected...
601.pre-commit-cache: found 5773 matching files and directories
602micromamba: found 89919 matching files and directories
603No URL provided, cache will not be uploaded to shared cache server. Cache will be stored only locally.
604Created cache
605 Cleaning up project directory and file based variables 00:02
606Job succeeded